MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-10-P3c3

Family name MIR-10 (all species)
Seed CCCUGAG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b3-v2  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1b4-v2  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c3-v2  Xla-Mir-10-P1c4-v1  Xla-Mir-10-P1c4-v2  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d3-v2  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P1d4-v2  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2  Xla-Mir-10-P2c3  Xla-Mir-10-P2c4  Xla-Mir-10-P3b  Xla-Mir-10-P3c4  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3c  Ami-Mir-10-P3c  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3c  Cfa-Mir-10-P3c  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3c  Cpi-Mir-10-P3c  Cpo-Mir-10-P3c  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3c  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3c  Gga-Mir-10-P3c  Gja-Mir-10-P3c  Hsa-Mir-10-P3c  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3c  Lgi-Mir-10-P3  Loc-Mir-10-P3c  Mdo-Mir-10-P3c  Mml-Mir-10-P3c  Mmu-Mir-10-P3c  Mun-Mir-10-P3c  Nve-Mir-10  Oan-Mir-10-P3c  Obi-Mir-10-P3  Ocu-Mir-10-P3c  Ovu-Mir-10-P3  Pbv-Mir-10-P3c  Pmi-Mir-10-P3  Rno-Mir-10-P3c  Sha-Mir-10-P3c  Sko-Mir-10-P3  Spt-Mir-10-P3c  Spu-Mir-10-P3  Sto-Mir-10-P3c  Tca-Mir-10-P3  Tgu-Mir-10-P3c  Xbo-Mir-10-P3  Xtr-Mir-10-P3c 
Node of Origin (locus) X. laevis
Node of Origin (family) Eumetazoa
Genome context
(GCF_001663975.1_XLA_v2)
NC_030726.1: 26412736-26412798 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCCACAGACUGAAGUUGGACUUUUCCUAGUCCCUGAGACCCUAACUUGUGAGGAUUUUUGAGAAACAAUCACAAGUUAGGCUCUUGGGACCUAGGCGGAGGGGAAACAGCAGCUUUGGACUG
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Structure
        10        20          30        40        50        60 
ACCCACAGACUGAAGUUGGA--|  UU     UC  UG   C            GGAUUUUU 
                      CUU  CCUAG  CC  AGA CCUAACUUGUGA        \
                      GAG  GGAUC  GG  UCU GGAUUGAACACU        G
GUCAGGUUUCGACGACAAAGGG^  GC     CA  GU   C            AACAAAGA 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-10-P3c3_5p

mirBase accessionNone
Sequence
0- UCCCUGAGACCCUAACUUGUGA -22
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Star sequence

Xla-Mir-10-P3c3_3p*

mirBase accessionNone
Sequence
41- ACAAGUUAGGCUCUUGGGACCU -63
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