MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-10-P2c4

Family name MIR-10 (all species)
Seed ACCCGUA
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-99
Paralogues Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b3-v2  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1b4-v2  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c3-v2  Xla-Mir-10-P1c4-v1  Xla-Mir-10-P1c4-v2  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d3-v2  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P1d4-v2  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2  Xla-Mir-10-P2c3  Xla-Mir-10-P3b  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2c  Ami-Mir-10-P2c  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2c  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2c  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cli-Mir-10-P2c  Cmi-Mir-10-P2c  Cpi-Mir-10-P2c  Cpo-Mir-10-P2c  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dno-Mir-10-P2c  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Ete-Mir-10-P2c  Gga-Mir-10-P2c  Gja-Mir-10-P2c  Hsa-Mir-10-P2c  Isc-Mir-10-P2  Lan-Mir-10-P2  Lch-Mir-10-P2c  Lgi-Mir-10-P2  Loc-Mir-10-P2c  Mml-Mir-10-P2c  Mmu-Mir-10-P2c  Mun-Mir-10-P2c  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2c  Obi-Mir-10-P2  Ocu-Mir-10-P2c  Ovu-Mir-10-P2  Pbv-Mir-10-P2c  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Rno-Mir-10-P2c  Sha-Mir-10-P2c  Sko-Mir-10-P2  Spt-Mir-10-P2c  Sto-Mir-10-P2c  Tca-Mir-10-P2  Tgu-Mir-10-P2c  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as  Xtr-Mir-10-P2c 
Node of Origin (locus) X. laevis
Node of Origin (family) Eumetazoa
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 26322951-26323009 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUAAAAUGCUUAUUUUACCUUCUAACAUAAACCCGUAGAUCCGAUCUUGUGGUGAAUUCCUUUGCUCAAGCUCGUUUCUAUGGGUCUGUGUCAUUAUGGAUCUGGAACUACAUUUUAU
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Structure
        10         20         30        40        50         
UUUAAAAUGCUUAUUUUA-  UUCUA-|    A         UC   U    UGGUGAAU 
                   CC      ACAUA ACCCGUAGA  CGA CUUG        \
                   GG      UGUGU UGGGUAUCU  GCU GAAC        U
UAUUUUACAUCAAGGUCUA  UAUUAC^    C         UU   C    UCGUUUCC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-10-P2c4_5p
mirBase accessionMIMAT0046619
Sequence 
0- AACCCGUAGAUCCGAUCUUGUG -22
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Star sequence

Xla-Mir-10-P2c4_3p*
mirBase accessionMIMAT0046620
Sequence 
37- CAAGCUCGUUUCUAUGGGUCUG -59
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