Mir-10-P2c

MirGeneDB ID

Cpi-Mir-10-P2c

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-99a

Paralogues

Cpi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v2 Cpi-Mir-10-P1c-v1 Cpi-Mir-10-P1c-v2 Cpi-Mir-10-P1d-v1 Cpi-Mir-10-P1d-v2 Cpi-Mir-10-P2b Cpi-Mir-10-P2d Cpi-Mir-10-P3b Cpi-Mir-10-P3c Cpi-Mir-10-P3d

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2c Ami-Mir-10-P2c Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2c Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2c Cgi-Mir-10-P2 Cin-Mir-10-P2 Cli-Mir-10-P2c Cmi-Mir-10-P2c Cpo-Mir-10-P2c Cte-Mir-10-P2 Dan-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2c Dpu-Mir-10-P2 Dre-Mir-10-P2c1 Dre-Mir-10-P2c2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Ete-Mir-10-P2c Gga-Mir-10-P2c Gja-Mir-10-P2c Gmo-Mir-10-P2c2 Hsa-Mir-10-P2c Isc-Mir-10-P2 Lan-Mir-10-P2 Lch-Mir-10-P2c Lgi-Mir-10-P2 Loc-Mir-10-P2c Mal-Mir-10-P2c2 Mml-Mir-10-P2c Mmu-Mir-10-P2c Mun-Mir-10-P2c Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2c Obi-Mir-10-P2 Ocu-Mir-10-P2c Ovu-Mir-10-P2 Pbv-Mir-10-P2c Pfl-Mir-10-P2 Pmi-Mir-10-P2 Rno-Mir-10-P2c Sha-Mir-10-P2c Sko-Mir-10-P2 Spt-Mir-10-P2c Sto-Mir-10-P2c Tca-Mir-10-P2 Tgu-Mir-10-P2c Xbo-Mir-10-P2 Xbo-Mir-10-P2-as Xla-Mir-10-P2c3 Xla-Mir-10-P2c4 Xtr-Mir-10-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(chrPic1)

JH584644: 4201853-4201911 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2c)

Mir-10-P2c JH584644: 4201853-4201911 [+] UCSC Ensembl
Let-7-P1c JH584644: 4202594-4202660 [+] UCSC Ensembl
Mir-10-P3c JH584644: 4247970-4248031 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAUGCUAGCUGAUGGUGCCAAUUGGCAUAAACCCGUAGAUCCGAUCUUGUGGUAAAGUAUACUGCACAAGCUCGCUUCUAUGGGUCUGUGUCACUCUGGUGAUCUGGCAAAAGAUUAC

Get precursor sequence

Structure

        10         20         30        40        50         
AGAUGCUAGCUGAUGGU-    AU-|      A         UC   U      GUAAAG 
                  GCCA   UGGCAUA ACCCGUAGA  CGA CUUGUG      \
                  UGGU   ACUGUGU UGGGUAUCU  GCU GAACAC      U
CAUUAGAAAACGGUCUAG    CUC^      C         UC   C      GUCAUA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

Based on the 3' moR reads in human (P2b) and platypus (P2c) it appears that this is a Group 2 miRNA.

3' NTU

Yes

Motifs

UG at 5p(-14)

Tissue expression

Te	Te	Te	To

Mature sequence

Cpi-Mir-10-P2c_5p

mirBase accession

MIMAT0037710

Sequence

0- AACCCGUAGAUCCGAUCUUGUG -22

Get sequence

Star sequence

Cpi-Mir-10-P2c_3p*

mirBase accession

MIMAT0037711

Sequence

37- CAAGCUCGCUUCUAUGGGUCUG -59

Get sequence