Mir-10-P2c3

MirGeneDB ID

Xla-Mir-10-P2c3

Family name

Species

MiRBase ID

Paralogues

Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b4-v1 Xla-Mir-10-P1c3-v1 Xla-Mir-10-P1c4-v1 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d4-v1 Xla-Mir-10-P2b1 Xla-Mir-10-P2b2 Xla-Mir-10-P2c4 Xla-Mir-10-P3b Xla-Mir-10-P3c3 Xla-Mir-10-P3c4 Xla-Mir-10-P3d3 Xla-Mir-10-P3d4

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2c Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2c Asp-Mir-10 Bfl-Mir-10-P2-v1 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bpl-Mir-10-P2 Bta-Mir-10-P2c Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2c Cin-Mir-10-P2 Cja-Mir-10-P2c Cli-Mir-10-P2c Cmi-Mir-10-P2c Cpi-Mir-10-P2c Cpo-Mir-10-P2c Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2c Dpu-Mir-10-P2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Eca-Mir-10-P2c Ete-Mir-10-P2c Gga-Mir-10-P2c Gja-Mir-10-P2c Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2c Isc-Mir-10-P2 Laf-Mir-10-P2c Lan-Mir-10-P2 Lch-Mir-10-P2c Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2c Mgi-Mir-10-P2 Mml-Mir-10-P2c Mmr-Mir-10-P2c Mmu-Mir-10-P2c Mom-Mir-10-P2 Mun-Mir-10-P2c Neu-Mir-10-P2c Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2c Obi-Mir-10-P2 Ocu-Mir-10-P2c Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2c Pau-Mir-10-P2 Pbv-Mir-10-P2c Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2c Rph-Mir-10-P2 Sha-Mir-10-P2c Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2c Sto-Mir-10-P2c Tca-Mir-10-P2 Tgu-Mir-10-P2c Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as Xtr-Mir-10-P2c

Node of Origin (locus)

X. laevis

Node of Origin (family)

Eumetazoa

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 9127103-9127161 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2c3)

Let-7-P1c3 NC_030727.1: 9126439-9126505 [-] UCSC Ensembl
Let-7-P1c4 NC_030727.1: 9126439-9126505 [-] UCSC Ensembl
Mir-10-P2c3 NC_030727.1: 9127103-9127161 [-] UCSC Ensembl

Seed

ACCCGUA

Precursor
(pre-Mir +30nt flank)

UUUAUAAUGUUUACUUUACCUUCUAACAUAAACCCGUAGAUCCGAUCUUGUGGUGAAUUCCUUUGCUCAAGCUCGUUUCUAUGGGUCUGUGUCAUUAUGGAUCCGGAACUACAAUCUGC

Get precursor sequence

Structure

        10         20         30        40        50         
UUUAUAAUGUUUACUUUA-  UUCUA-|    A         UC   U    UGGUGAAU 
                   CC      ACAUA ACCCGUAGA  CGA CUUG        \
                   GG      UGUGU UGGGUAUCU  GCU GAAC        U
CGUCUAACAUCAAGGCCUA  UAUUAC^    C         UU   C    UCGUUUCC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-10-P2c3_5p

mirBase accession

None

Sequence

0- AACCCGUAGAUCCGAUCUUGUG -22

Get sequence

Star sequence

Xla-Mir-10-P2c3_3p*

mirBase accession

None

Sequence

37- CAAGCUCGUUUCUAUGGGUCUG -59

Get sequence