Mir-10-P2c

MirGeneDB ID

Loc-Mir-10-P2c

Family name

MIR-10 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-10-P1b-v1 Loc-Mir-10-P1c-v1 Loc-Mir-10-P1d-v1 Loc-Mir-10-P2d Loc-Mir-10-P3b Loc-Mir-10-P3c Loc-Mir-10-P3d

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2c Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2c Asp-Mir-10 Bfl-Mir-10-P2-v1 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bpl-Mir-10-P2 Bta-Mir-10-P2c Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2c Cin-Mir-10-P2 Cja-Mir-10-P2c Cli-Mir-10-P2c Cmi-Mir-10-P2c Cpi-Mir-10-P2c Cpo-Mir-10-P2c Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2c Dpu-Mir-10-P2 Dre-Mir-10-P2c1 Dre-Mir-10-P2c2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Eca-Mir-10-P2c Ete-Mir-10-P2c Gga-Mir-10-P2c Gja-Mir-10-P2c Gmo-Mir-10-P2c2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2c Isc-Mir-10-P2 Laf-Mir-10-P2c Lan-Mir-10-P2 Lch-Mir-10-P2c Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Mal-Mir-10-P2c2 Mgi-Mir-10-P2 Mml-Mir-10-P2c Mmr-Mir-10-P2c Mmu-Mir-10-P2c Mom-Mir-10-P2 Mun-Mir-10-P2c Neu-Mir-10-P2c Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2c Obi-Mir-10-P2 Ocu-Mir-10-P2c Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2c Pau-Mir-10-P2 Pbv-Mir-10-P2c Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2c Rph-Mir-10-P2 Sha-Mir-10-P2c Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2c Sto-Mir-10-P2c Tca-Mir-10-P2 Tgu-Mir-10-P2c Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as Xla-Mir-10-P2c3 Xla-Mir-10-P2c4 Xtr-Mir-10-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(LepOcu1)

LG3: 90360-90418 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2c)

Mir-10-P3c LG3: 67031-67092 [-] Ensembl
Let-7-P1c LG3: 87762-87828 [-] Ensembl
Mir-10-P2c LG3: 90360-90418 [-] Ensembl

Seed

ACCCGUA

Precursor
(pre-Mir +30nt flank)

UUCUGUCUUUAAGAUGAGCCACUUGUCAUAAACCCGUAGAUCCGAUCUUGUGGUGAUUUGAGCUGCACAAGCUCGCUUCUAUGGGUCUUUGUCAAGUGGCAUGGCAAAACCCAUUACUA

Get precursor sequence

Structure

        10          20        30        40        50         
UUCUGUCUUUAAGAUGA--|       U  UAA         UC   U      GUGAUU 
                   GCCACUUG CA   ACCCGUAGA  CGA CUUGUG      \
                   CGGUGAAC GU   UGGGUAUCU  GCU GAACAC      U
AUCAUUACCCAAAACGGUA^       U  UUC         UC   C      GUCGAG 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-10-P2c_5p

mirBase accession

None

Sequence

0- AACCCGUAGAUCCGAUCUUGUG -22

Get sequence

Star sequence

Loc-Mir-10-P2c_3p*

mirBase accession

None

Sequence

37- CAAGCUCGCUUCUAUGGGUCUU -59

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