MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-10-P3b

Family name MIR-10 (all species)
Seed CCCUGAG
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-10-P1b-v1  Loc-Mir-10-P1b-v2  Loc-Mir-10-P1c-v1  Loc-Mir-10-P1c-v2  Loc-Mir-10-P1d-v1  Loc-Mir-10-P1d-v2  Loc-Mir-10-P2c  Loc-Mir-10-P2d  Loc-Mir-10-P3c  Loc-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Ami-Mir-10-P3b  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cfa-Mir-10-P3b  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cpi-Mir-10-P3b  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Hsa-Mir-10-P3b  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lgi-Mir-10-P3  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mml-Mir-10-P3b  Mmu-Mir-10-P3b  Mun-Mir-10-P3b  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ovu-Mir-10-P3  Pbv-Mir-10-P3b  Pmi-Mir-10-P3  Rno-Mir-10-P3b  Sha-Mir-10-P3b  Sko-Mir-10-P3  Spt-Mir-10-P3b  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  Tni-Mir-10-P3b2  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xtr-Mir-10-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(LepOcu1)
LG24: 1130187-1130245 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAACUACAUUUCCCAGCAUGCCUCCCCGUCCCUGAGACCCUUAACCUGUGAGGUCAAUGGAGGUCACAGGUGAGGUCCUCGGGAACAGGGCUCCAUGCCUCAGCUUCAGAGGGGGAA
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Structure
        10          20        30        40        50         
CAAAACUACAUUUCCCA--|    CCU   C  C      AC     A       GGUCA 
                   GCAUG   CCC GU CCUGAG  CCUUA CCUGUGA     A
                   CGUAC   GGG CA GGGCUC  GGAGU GGACACU     U
AAGGGGGAGACUUCGACUC^    CUC   A  A      CU     -       GGAGG 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-10-P3b_5p

mirBase accessionNone
Sequence
0- UCCCUGAGACCCUUAACCUGUGA -23
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Star sequence

Loc-Mir-10-P3b_3p*

mirBase accessionNone
Sequence
37- ACAGGUGAGGUCCUCGGGAACA -59
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