MirGeneDB ID | Bta-Mir-10-P3b |
Family name |
MIR-10 (all species) |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-125a
|
Paralogues |
Bta-Mir-10-P1b-v1
Bta-Mir-10-P1c-v1
Bta-Mir-10-P2b
Bta-Mir-10-P2c
Bta-Mir-10-P2d
Bta-Mir-10-P3c
Bta-Mir-10-P3d
|
Orthologues |
Aae-Mir-10-P3
Aca-Mir-10-P3b
Adi-Mir-10
Aga-Mir-10-P3
Agr-Mir-10-P3
Ami-Mir-10-P3b
Asp-Mir-10
Asu-Mir-10-P3
Bfl-Mir-10-P3
Bge-Mir-10-P3
Bko-Mir-10-P3
Bla-Mir-10-P3
Bpl-Mir-10-P3
Cfa-Mir-10-P3b
Cin-Mir-10-P3
Cja-Mir-10-P3b
Cpi-Mir-10-P3b
Cpo-Mir-10-P3b
Cte-Mir-10-P3
Dan-Mir-10-P3
Dlo-Mir-10-P3
Dma-Mir-10-P3
Dme-Mir-10-P3
Dmo-Mir-10-P3
Dpu-Mir-10-P3
Dre-Mir-10-P3b1
Dre-Mir-10-P3b2
Dsi-Mir-10-P3
Dya-Mir-10-P3
Eba-Mir-10-P3
Eca-Mir-10-P3b
Egr-Mir-10-P3
Esc-Mir-10-P3
Ete-Mir-10-P3b
Gja-Mir-10-P3b
Gmo-Mir-10-P3b1
Gmo-Mir-10-P3b2
Gpa-Mir-10-P3
Gsa-Mir-10-P3
Gsp-Mir-10-P3
Hru-Mir-10-P3
Hsa-Mir-10-P3b
Isc-Mir-10-P3
Laf-Mir-10-P3b
Lan-Mir-10-P3
Lch-Mir-10-P3b
Lgi-Mir-10-P3
Lhy-Mir-10-P3
Llo-Mir-10-P3
Loc-Mir-10-P3b
Mal-Mir-10-P3b1
Mal-Mir-10-P3b2
Mgi-Mir-10-P3
Mml-Mir-10-P3b
Mmr-Mir-10-P3b
Mmu-Mir-10-P3b
Mom-Mir-10-P3
Mun-Mir-10-P3b
Nag-Mir-10-P3-v1
Nve-Mir-10
Oan-Mir-10-P3b
Obi-Mir-10-P3
Ocu-Mir-10-P3b
Ofu-Mir-10-P3
Ovu-Mir-10-P3
Pab-Mir-10-P3b
Pau-Mir-10-P3
Pbv-Mir-10-P3b
Pca-Mir-10-P3
Pcr-Mir-10-P3
Pdu-Mir-10-P3
Ple-Mir-10-P3
Pmi-Mir-10-P3
Pve-Mir-10-P3
Rno-Mir-10-P3b
Rph-Mir-10-P3
Sha-Mir-10-P3b
Sko-Mir-10-P3
Snu-Mir-10-P3
Spt-Mir-10-P3b
Spu-Mir-10-P3
Sto-Mir-10-P3b
Tca-Mir-10-P3
Tni-Mir-10-P3b2
War-Mir-10-P3
Xbo-Mir-10-P3
Xla-Mir-10-P3b
Xtr-Mir-10-P3b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037345.1: 57689571-57689630 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-10-P3b) |
Mir-10-P2b
NC_037345.1: 57688896-57688955 [+]
UCSC
Ensembl
Let-7-P1b
NC_037345.1: 57689065-57689131 [+]
UCSC
Ensembl
Mir-10-P3b
NC_037345.1: 57689571-57689630 [+]
UCSC
Ensembl
|
Seed |
CCCUGAG |
Precursor (pre-Mir +30nt flank) |
CACACACACAUCACACUGCCGGCCUCUGCGUCCCUGAGACCCUUUAACCUGUGAGGACGUCCAGGGUCACAGGUGAGGUUCUUGGGAGCCUGGCGUCCGGCCCAACCACCAGCCUGGGGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CACACACACAUCACACU-- - -| CU G U C UA GGACG
GCCGG C CU GC UCCC GAGA CCUU ACCUGUGA U
CGGCC G GG CG AGGG UUCU GGAG UGGACACU C
CGGGGUCCGACCACCAACC U C^ UC - - U -- GGGAC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Mature sequence |
Bta-Mir-10-P3b_5p |
mirBase accession | MIMAT0003538 |
Sequence |
0- UCCCUGAGACCCUUUAACCUGUGA -24
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-125a
|
Star sequence |
Bta-Mir-10-P3b_3p* |
mirBase accession | None |
Sequence |
38- ACAGGUGAGGUUCUUGGGAGCC -60
Get sequence
|