MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-10-P3b

Family name MIR-10 (all species)
Seed CCCUGAG
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-10-P1b  Spt-Mir-10-P1c  Spt-Mir-10-P2b  Spt-Mir-10-P2c  Spt-Mir-10-P2d  Spt-Mir-10-P3c  Spt-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Ami-Mir-10-P3b  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cfa-Mir-10-P3b  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cpi-Mir-10-P3b  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Hsa-Mir-10-P3b  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lgi-Mir-10-P3  Loc-Mir-10-P3b  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mml-Mir-10-P3b  Mmu-Mir-10-P3b  Mun-Mir-10-P3b  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ovu-Mir-10-P3  Pbv-Mir-10-P3b  Pmi-Mir-10-P3  Rno-Mir-10-P3b  Sha-Mir-10-P3b  Sko-Mir-10-P3  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  Tni-Mir-10-P3b2  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xtr-Mir-10-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01000342.1: 1256267-1256326 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCAAUUCACUUCUCAGCCUCCCUCUCUGUCCCUGAGACCCUUAACCUGUGAGGACGCCCAGAGGUCACAGGUGAGGUUCUUGGGAACUGAGCGAGCGGCCCCUUCGCCCUCAUCCAGC
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Structure
        10          20        30        40        50          
CUGCAAUUCACUUCUCA--|  UCCCU   U  C  UG   C     A       GGACGC 
                   GCC     CUC GU CC  AGA CCUUA CCUGUGA      \
                   CGG     GAG CA GG  UCU GGAGU GGACACU      C
CGACCUACUCCCGCUUCCC^  CGAGC   U  A  GU   U     -       GGAGAC 
.       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Spt-Mir-10-P3b_5p (predicted)

mirBase accessionNone
Sequence
0- UCCCUGAGACCCUUAACCUGUGA -23
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Star sequence

Spt-Mir-10-P3b_3p* (predicted)

mirBase accessionNone
Sequence
38- ACAGGUGAGGUUCUUGGGAACU -60
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