Mir-10-P3b

MirGeneDB ID

Rno-Mir-10-P3b

Family name

MIR-10 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-125a

Paralogues

Rno-Mir-10-P1b-v1 Rno-Mir-10-P1c-v1 Rno-Mir-10-P2b Rno-Mir-10-P2c Rno-Mir-10-P2d Rno-Mir-10-P3c Rno-Mir-10-P3d

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3b Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3b Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3b Cfa-Mir-10-P3b Cin-Mir-10-P3 Cja-Mir-10-P3b Cpi-Mir-10-P3b Cpo-Mir-10-P3b Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3b Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3b Gja-Mir-10-P3b Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3b Isc-Mir-10-P3 Laf-Mir-10-P3b Lan-Mir-10-P3 Lch-Mir-10-P3b Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3b Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mgi-Mir-10-P3 Mml-Mir-10-P3b Mmr-Mir-10-P3b Mmu-Mir-10-P3b Mom-Mir-10-P3 Mun-Mir-10-P3b Nag-Mir-10-P3-v1 Nve-Mir-10 Oan-Mir-10-P3b Obi-Mir-10-P3 Ocu-Mir-10-P3b Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3b Pau-Mir-10-P3 Pbv-Mir-10-P3b Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rph-Mir-10-P3 Sha-Mir-10-P3b Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3b Spu-Mir-10-P3 Sto-Mir-10-P3b Tca-Mir-10-P3 Tni-Mir-10-P3b2 War-Mir-10-P3 Xbo-Mir-10-P3 Xla-Mir-10-P3b Xtr-Mir-10-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(rn6)

chr1: 59704841-59704900 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3b)

Mir-10-P2b chr1: 59704222-59704281 [+] UCSC Ensembl
Let-7-P1b chr1: 59704395-59704461 [+] UCSC Ensembl
Mir-10-P3b chr1: 59704841-59704900 [+] UCSC Ensembl

Seed

CCCUGAG

Precursor
(pre-Mir +30nt flank)

UCCACCAUAGCUGCAUUGCCGGCCUCUGGGUCCCUGAGACCCUUUAACCUGUGAGGACGUCCAGGGUCACAGGUGAGGUUCUUGGGAGCCUGGCGCCUGGCUCAGCCACAACUUAGGGAU

Get precursor sequence

Structure

        10          20         30        40        50        60
UCCACCAUAGCUGCAUU--   -|  CU UG  UC  UG   C    UA        GGACG 
                   GCC GGC  C  GG  CC  AGA CCUU  ACCUGUGA     U
                   CGG CCG  G  CC  GG  UCU GGAG  UGGACACU     C
UAGGGAUUCAACACCGACU   U^  C- GU  GA  GU   U    --        GGGAC 
.       110       100         90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-10-P3b_5p

mirBase accession

MIMAT0000829

Sequence

0- UCCCUGAGACCCUUUAACCUGUGA -24

Get sequence

Proposed targets

microrna.org: MIMAT0000829
TargetScanVert: rno-miR-125a-5p
miRDB: MIMAT0000829

Star sequence

Rno-Mir-10-P3b_3p*

mirBase accession

MIMAT0004729

Sequence

38- ACAGGUGAGGUUCUUGGGAGCC -60

Get sequence

Proposed targets

microrna.org: MIMAT0004729
TargetScanVert: rno-miR-125a-3p
miRDB: MIMAT0004729