Mir-10-P3b

MirGeneDB ID

Rno-Mir-10-P3b

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-125a

Paralogues

Rno-Mir-10-P1b-v1 Rno-Mir-10-P1b-v2 Rno-Mir-10-P1c-v1 Rno-Mir-10-P1c-v2 Rno-Mir-10-P2b Rno-Mir-10-P2c Rno-Mir-10-P2d Rno-Mir-10-P3c Rno-Mir-10-P3d

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3b Ami-Mir-10-P3b Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3b Cfa-Mir-10-P3b Cgi-Mir-10-P3 Cin-Mir-10-P3 Cpi-Mir-10-P3b Cpo-Mir-10-P3b Cte-Mir-10-P3 Dan-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3b Gja-Mir-10-P3b Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Hsa-Mir-10-P3b Isc-Mir-10-P3 Lan-Mir-10-P3 Lch-Mir-10-P3b Lgi-Mir-10-P3 Loc-Mir-10-P3b Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mml-Mir-10-P3b Mmu-Mir-10-P3b Mun-Mir-10-P3b Nve-Mir-10 Oan-Mir-10-P3b Obi-Mir-10-P3 Ocu-Mir-10-P3b Ovu-Mir-10-P3 Pbv-Mir-10-P3b Pmi-Mir-10-P3 Sha-Mir-10-P3b Sko-Mir-10-P3 Spt-Mir-10-P3b Spu-Mir-10-P3 Sto-Mir-10-P3b Tca-Mir-10-P3 Tni-Mir-10-P3b2 Xbo-Mir-10-P3 Xla-Mir-10-P3b Xtr-Mir-10-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(rn6)

chr1: 59704841-59704900 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3b)

Mir-10-P2b chr1: 59704222-59704281 [+] UCSC Ensembl
Let-7-P1b chr1: 59704395-59704461 [+] UCSC Ensembl
Mir-10-P3b chr1: 59704841-59704900 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCACCAUAGCUGCAUUGCCGGCCUCUGGGUCCCUGAGACCCUUUAACCUGUGAGGACGUCCAGGGUCACAGGUGAGGUUCUUGGGAGCCUGGCGCCUGGCUCAGCCACAACUUAGGGAU

Get precursor sequence

Structure

        10          20         30        40        50        60
UCCACCAUAGCUGCAUU--   -|  CU UG  UC  UG   C    UA        GGACG 
                   GCC GGC  C  GG  CC  AGA CCUU  ACCUGUGA     U
                   CGG CCG  G  CC  GG  UCU GGAG  UGGACACU     C
UAGGGAUUCAACACCGACU   U^  C- GU  GA  GU   U    --        GGGAC 
.       110       100         90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-10-P3b_5p

mirBase accession

MIMAT0000829

Sequence

0- UCCCUGAGACCCUUUAACCUGUGA -24

Get sequence

Proposed targets

microrna.org: MIMAT0000829
TargetScanVert: rno-miR-125a-5p
miRDB: MIMAT0000829

Star sequence

Rno-Mir-10-P3b_3p*

mirBase accession

MIMAT0004729

Sequence

38- ACAGGUGAGGUUCUUGGGAGCC -60

Get sequence

Proposed targets

microrna.org: MIMAT0004729
TargetScanVert: rno-miR-125a-3p
miRDB: MIMAT0004729