Mir-10-P3d

MirGeneDB ID

Rno-Mir-10-P3d

Family name

MIR-10 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-125b-1

Paralogues

Rno-Mir-10-P1b-v1 Rno-Mir-10-P1c-v1 Rno-Mir-10-P2b Rno-Mir-10-P2c Rno-Mir-10-P2d Rno-Mir-10-P3b Rno-Mir-10-P3c

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3d Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3d Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3d Cfa-Mir-10-P3d Cin-Mir-10-P3 Cja-Mir-10-P3d Cli-Mir-10-P3d Cmi-Mir-10-P3d Cpi-Mir-10-P3d Cpo-Mir-10-P3d Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3d Dpu-Mir-10-P3 Dre-Mir-10-P3d1 Dre-Mir-10-P3d2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3d Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3d Gga-Mir-10-P3d Gja-Mir-10-P3d Gmo-Mir-10-P3d1 Gmo-Mir-10-P3d2 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3d Isc-Mir-10-P3 Laf-Mir-10-P3d Lan-Mir-10-P3 Lch-Mir-10-P3d Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3d Mal-Mir-10-P3d1 Mal-Mir-10-P3d2 Mdo-Mir-10-P3d Mgi-Mir-10-P3 Mml-Mir-10-P3d Mmr-Mir-10-P3d Mmu-Mir-10-P3d Mom-Mir-10-P3 Mun-Mir-10-P3d Nag-Mir-10-P3-v1 Neu-Mir-10-P3d Nve-Mir-10 Oan-Mir-10-P3d Obi-Mir-10-P3 Ocu-Mir-10-P3d Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3d Pau-Mir-10-P3 Pbv-Mir-10-P3d Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rph-Mir-10-P3 Sha-Mir-10-P3d Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3d Spu-Mir-10-P3 Sto-Mir-10-P3d Tca-Mir-10-P3 Tgu-Mir-10-P3d Tni-Mir-10-P3d1 Tni-Mir-10-P3d2 War-Mir-10-P3 Xbo-Mir-10-P3 Xla-Mir-10-P3d3 Xla-Mir-10-P3d4 Xtr-Mir-10-P3d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(rn6)

chr8: 45798274-45798335 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3d)

Let-7-P1d chr8: 45753280-45753346 [+] UCSC Ensembl
Mir-10-P3d chr8: 45798274-45798335 [+] UCSC Ensembl

Seed

CCCUGAG

Precursor
(pre-Mir +30nt flank)

AAAGGAAGAAUUGUGUUGCGCUCCCCUCAGUCCCUGAGACCCUAACUUGUGAUGUUUACCGUUUAAAUCCACGGGUUAGGCUCUUGGGAGCUGCGAGUCGUGCCUUUGCAUCGCUGAAGGAA

Get precursor sequence

Structure

        10            20         30        40        50        60
AAAGGAAGAAUUGUGUU----   -|  CCCU   UC  UG   C           AUGUUUAC 
                     GCG CUC    CAG  CC  AGA CCUAACUUGUG        C
                     UGC GAG    GUC  GG  UCU GGAUUGGGCAC        G
AAGGAAGUCGCUACGUUUCCG   U^  C---   GA  GU   C           CUAAAUUU 
120       110       100           90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-10-P3d_5p

mirBase accession

MIMAT0000830

Sequence

0- UCCCUGAGACCCUAACUUGUGA -22

Get sequence

Proposed targets

microrna.org: MIMAT0000830
TargetScanVert: rno-miR-125b-5p
miRDB: MIMAT0000830

Star sequence

Rno-Mir-10-P3d_3p*

mirBase accession

MIMAT0004730

Sequence

40- ACGGGUUAGGCUCUUGGGAGCU -62

Get sequence

Proposed targets

microrna.org: MIMAT0004730
TargetScanVert: rno-miR-125b-1-3p
miRDB: MIMAT0004730