MirGeneDB ID | Cmi-Mir-10-P3d |
Family name |
MIR-10 (all species) |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-10-P1b-v1
Cmi-Mir-10-P1c-v1
Cmi-Mir-10-P1d-v1
Cmi-Mir-10-P2c
Cmi-Mir-10-P2d
|
Orthologues |
Aae-Mir-10-P3
Aca-Mir-10-P3d
Adi-Mir-10
Aga-Mir-10-P3
Agr-Mir-10-P3
Ami-Mir-10-P3d
Asp-Mir-10
Asu-Mir-10-P3
Bfl-Mir-10-P3
Bge-Mir-10-P3
Bko-Mir-10-P3
Bla-Mir-10-P3
Bpl-Mir-10-P3
Bta-Mir-10-P3d
Cfa-Mir-10-P3d
Cin-Mir-10-P3
Cja-Mir-10-P3d
Cli-Mir-10-P3d
Cpi-Mir-10-P3d
Cpo-Mir-10-P3d
Cte-Mir-10-P3
Dan-Mir-10-P3
Dlo-Mir-10-P3
Dma-Mir-10-P3
Dme-Mir-10-P3
Dmo-Mir-10-P3
Dno-Mir-10-P3d
Dpu-Mir-10-P3
Dre-Mir-10-P3d1
Dre-Mir-10-P3d2
Dsi-Mir-10-P3
Dya-Mir-10-P3
Eba-Mir-10-P3
Eca-Mir-10-P3d
Egr-Mir-10-P3
Esc-Mir-10-P3
Ete-Mir-10-P3d
Gga-Mir-10-P3d
Gja-Mir-10-P3d
Gmo-Mir-10-P3d1
Gmo-Mir-10-P3d2
Gpa-Mir-10-P3
Gsa-Mir-10-P3
Gsp-Mir-10-P3
Hru-Mir-10-P3
Hsa-Mir-10-P3d
Isc-Mir-10-P3
Laf-Mir-10-P3d
Lan-Mir-10-P3
Lch-Mir-10-P3d
Lgi-Mir-10-P3
Lhy-Mir-10-P3
Llo-Mir-10-P3
Loc-Mir-10-P3d
Mal-Mir-10-P3d1
Mal-Mir-10-P3d2
Mdo-Mir-10-P3d
Mgi-Mir-10-P3
Mml-Mir-10-P3d
Mmr-Mir-10-P3d
Mmu-Mir-10-P3d
Mom-Mir-10-P3
Mun-Mir-10-P3d
Nag-Mir-10-P3-v1
Neu-Mir-10-P3d
Nve-Mir-10
Oan-Mir-10-P3d
Obi-Mir-10-P3
Ocu-Mir-10-P3d
Ofu-Mir-10-P3
Ovu-Mir-10-P3
Pab-Mir-10-P3d
Pau-Mir-10-P3
Pbv-Mir-10-P3d
Pca-Mir-10-P3
Pcr-Mir-10-P3
Pdu-Mir-10-P3
Ple-Mir-10-P3
Pmi-Mir-10-P3
Pve-Mir-10-P3
Rno-Mir-10-P3d
Rph-Mir-10-P3
Sha-Mir-10-P3d
Sko-Mir-10-P3
Snu-Mir-10-P3
Spt-Mir-10-P3d
Spu-Mir-10-P3
Sto-Mir-10-P3d
Tca-Mir-10-P3
Tgu-Mir-10-P3d
Tni-Mir-10-P3d1
Tni-Mir-10-P3d2
War-Mir-10-P3
Xbo-Mir-10-P3
Xla-Mir-10-P3d3
Xla-Mir-10-P3d4
Xtr-Mir-10-P3d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636213.1: 89955-90016 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-10-P3d) |
Mir-10-P2d
KI636213.1: 67012-67069 [+]
UCSC
Ensembl
Let-7-P1d
KI636213.1: 67723-67789 [+]
UCSC
Ensembl
Mir-10-P3d
KI636213.1: 89955-90016 [+]
UCSC
Ensembl
|
Seed |
CCCUGAG |
Precursor (pre-Mir +30nt flank) |
AAAGCCACACUCAAUUUGCACCGCUCUCAGUCCCUGAGACCCUAACUUGUGAUGUUUAACUUCUUAAUCCACGGGUUAGGCUCUUGGGAUCUGUGUGUUGUGUACCAACGUCUCAUGUAGAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAGCCACACUCAAUUU--| C UCU UC UG C AUGUUUAA
GCAC GC CAG CC AGA CCUAACUUGUG C
UGUG UG GUC GG UCU GGAUUGGGCAC U
GAGAUGUACUCUGCAACCA^ U UGU UA GU C CUAAUUCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-10-P3d_5p |
mirBase accession | None |
Sequence |
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
|
Star sequence |
Cmi-Mir-10-P3d_3p* |
mirBase accession | None |
Sequence |
40- ACGGGUUAGGCUCUUGGGAUCU -62
Get sequence
|