MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-10-P3d1

Family name MIR-10 (all species)
Seed CCCUGAG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b1-v2  Tni-Mir-10-P1b2  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c1-v2  Tni-Mir-10-P1c2-v1  Tni-Mir-10-P1c2-v2  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P1d1-v2  Tni-Mir-10-P2d1  Tni-Mir-10-P2d2  Tni-Mir-10-P3b2  Tni-Mir-10-P3d2 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3d  Ami-Mir-10-P3d  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3d  Cfa-Mir-10-P3d  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3d  Cpo-Mir-10-P3d  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dre-Mir-10-P3d1  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3d  Gga-Mir-10-P3d  Gja-Mir-10-P3d  Gmo-Mir-10-P3d1  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Loc-Mir-10-P3d  Mal-Mir-10-P3d1  Mdo-Mir-10-P3d  Mml-Mir-10-P3d  Mmu-Mir-10-P3d  Mun-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3d  Ovu-Mir-10-P3  Pbv-Mir-10-P3d  Pmi-Mir-10-P3  Rno-Mir-10-P3d  Sha-Mir-10-P3d  Sko-Mir-10-P3  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3d  Xbo-Mir-10-P3  Xtr-Mir-10-P3d 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 16: 8246142-8246203 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUCAGGGUGUGUACCUGUGUCUCUCUCCGUCCCUGAGACCCUAACUUGUGACGUUGUGCCUUCGUGUCCACGGGUUAGGCUCUCGGGAGCUGAGAGGGGUCCACGUCCAGCUCCGUCGGCC
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Structure
        10          20        30        40        50        60
CCUCAGGGUGUGUACCU--|UG        C UC       C           ACGUUGUG 
                   G  UCUCUCUC G  CCUGAGA CCUAACUUGUG        C
                   C  GGGGAGAG C  GGGCUCU GGAUUGGGCAC        C
CCGGCUGCCUCGACCUGCA^CU        U GA       C           CUGUGCUU 
120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-10-P3d1_5p
mirBase accessionNone
Sequence 
0- UCCCUGAGACCCUAACUUGUGA -22
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Star sequence

Tni-Mir-10-P3d1_3p*
mirBase accessionNone
Sequence 
40- ACGGGUUAGGCUCUCGGGAGCU -62
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