MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-10-P1b1

Family name MIR-10 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-10b-2
Paralogues Tni-Mir-10-P1b2  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c2-v1  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P2d1  Tni-Mir-10-P2d2  Tni-Mir-10-P3b2  Tni-Mir-10-P3d1  Tni-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1b-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1b-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1b-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1b-v1  Cja-Mir-10-P1b-v1  Cli-Mir-10-P1b-v1  Cmi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v1  Cpo-Mir-10-P1b-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1b-v1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1b1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1b-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1b-v1  Gga-Mir-10-P1b-v1  Gja-Mir-10-P1b-v1  Gmo-Mir-10-P1b1-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hmi-Mir-10-P1b  Hru-Mir-10-P1  Hsa-Mir-10-P1b-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1b  Lch-Mir-10-P1b  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1b-v1  Mal-Mir-10-P1b1-v1  Mdo-Mir-10-P1b-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1b-v1  Mmr-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v1  Mom-Mir-10-P1  Mun-Mir-10-P1b-v1  Neu-Mir-10-P1b-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1b-v1  Ocu-Mir-10-P1b-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1b-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1b-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1b-v1  Rph-Mir-10-P1  Sha-Mir-10-P1b-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1b  Spu-Mir-10-P1  Sto-Mir-10-P1b-v1  Tca-Mir-10-P1-v1  Tgu-Mir-10-P1b-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1b-v1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 2: 13424290-13424351 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1b1-v1)		 Mir-10-P1b1-v1 2: 13424290-13424351 [-] UCSC Ensembl
Mir-10-P1b1-v2 2: 13424291-13424350 [-] UCSC Ensembl
Variant

Tni-Mir-10-P1b1-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
UCGAGUUUGGCUCUUGCCGUCGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGAUCAAGUCACAGUCACAGAUUCGAUUCUAGGGGAGUAUAUGGGCGAUGAAAAAACGUCGAUUUAAUG
Get precursor sequence
Structure
        10          20        30        40        50        60 
UCGAGUUUGGCUCUUGC--|             A    G     C         GUGAUCAA 
                   CGUCGUCUAUAUAU CCCU UAGAA CGAAUUUGU        \
                   GUAGCGGGUAUAUG GGGG AUCUU GCUUAGACA        G
GUAAUUUAGCUGCAAAAAA^             A    -     A         CUGACACU 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Sp Sp Sp To
Mature sequence

Tni-Mir-10-P1b1-v1_5p
mirBase accessionMIMAT0002964
Sequence 
0- UACCCUGUAGAACCGAAUUUGU -22
Get sequence
Star sequence

Tni-Mir-10-P1b1-v1_3p* (predicted)
mirBase accessionNone
Sequence 
41- AGAUUCGAUUCUAGGGGAGUA -62
Get sequence
Variant

Tni-Mir-10-P1b1-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
CGAGUUUGGCUCUUGCCGUCGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGAUCAAGUCACAGUCACAGAUUCGAUUCUAGGGGAGUAUAUGGGCGAUGAAAAAACGUCGAUUUAAU
Get precursor sequence
Structure
        10          20        30        40        50          
CGAGUUUGGCUCUUGCC--|            A    G     C          UGAUCAA 
                   GUCGUCUAUAUAU CCCU UAGAA CGAAUUUGUG       \
                   UAGCGGGUAUAUG GGGG AUCUU GCUUAGACAC       G
UAAUUUAGCUGCAAAAAAG^            A    -     A          UGACACU 
.       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
Sp Sp Sp To
Mature sequence

Tni-Mir-10-P1b1-v2_5p
mirBase accessionMIMAT0002964
Sequence 
0- ACCCUGUAGAACCGAAUUUGUG -22
Get sequence
Star sequence

Tni-Mir-10-P1b1-v2_3p* (predicted)
mirBase accessionNone
Sequence 
39- CAGAUUCGAUUCUAGGGGAGU -60
Get sequence