MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-10-P2d2

Family name MIR-10 (all species)
Seed ACCCGUA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-100
Paralogues Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b1-v2  Tni-Mir-10-P1b2  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c1-v2  Tni-Mir-10-P1c2-v1  Tni-Mir-10-P1c2-v2  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P1d1-v2  Tni-Mir-10-P2d1  Tni-Mir-10-P3b2  Tni-Mir-10-P3d1  Tni-Mir-10-P3d2 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2d  Ami-Mir-10-P2d  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2d  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2d  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cli-Mir-10-P2d  Cmi-Mir-10-P2d  Cpi-Mir-10-P2d  Cpo-Mir-10-P2d  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dno-Mir-10-P2d  Dpu-Mir-10-P2  Dre-Mir-10-P2d2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Ete-Mir-10-P2d  Gga-Mir-10-P2d  Gja-Mir-10-P2d  Gmo-Mir-10-P2d2  Hsa-Mir-10-P2d  Isc-Mir-10-P2  Lan-Mir-10-P2  Lch-Mir-10-P2d  Lgi-Mir-10-P2  Loc-Mir-10-P2d  Mal-Mir-10-P2d2  Mdo-Mir-10-P2d  Mml-Mir-10-P2d  Mmu-Mir-10-P2d  Mun-Mir-10-P2d  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2d  Obi-Mir-10-P2  Ocu-Mir-10-P2d  Ovu-Mir-10-P2  Pbv-Mir-10-P2d  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Rno-Mir-10-P2d  Sha-Mir-10-P2d  Sko-Mir-10-P2  Spt-Mir-10-P2d  Sto-Mir-10-P2d  Tca-Mir-10-P2  Tgu-Mir-10-P2d  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
7: 5619637-5619693 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2d2)
Mir-10-P3d2 7: 5613643-5613704 [-] UCSC Ensembl
Let-7-P1d2 7: 5619183-5619249 [-] UCSC Ensembl
Mir-10-P2d2 7: 5619637-5619693 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGGGUUUCAAGCUAACGCCUGCUGCCACAAACCCGUAGAUCCGAACUUGUGGUGACUGGCCGCACAAGCUCGUAUCUAUAGGUAUGUGUCCGCUUGGCAAAUGCAGCACCUGACUG
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Structure
        10         20         30        40        50        
UAGGGUUUCAAGCUAAC-   U-| UGC    A   CG     C   A      GUGAC 
                  GCC  GC   CACA ACC  UAGAU CGA CUUGUG     \
                  CGG  CG   GUGU UGG  AUCUA GCU GAACAC     U
GUCAGUCCACGACGUAAA   UU^ CCU    A   AU     U   C      GCCGG 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-10-P2d2_5p

mirBase accessionMIMAT0003064
Sequence
0- AACCCGUAGAUCCGAACUUGUG -22
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Star sequence

Tni-Mir-10-P2d2_3p*

mirBase accessionNone
Sequence
35- CAAGCUCGUAUCUAUAGGUAUG -57
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