MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-10-P2d

Family name MIR-10 (all species)
Seed ACCCGUA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-100
Paralogues Cpi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v2  Cpi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v2  Cpi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v2  Cpi-Mir-10-P2b  Cpi-Mir-10-P2c  Cpi-Mir-10-P3b  Cpi-Mir-10-P3c  Cpi-Mir-10-P3d 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2d  Ami-Mir-10-P2d  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2d  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2d  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cli-Mir-10-P2d  Cmi-Mir-10-P2d  Cpo-Mir-10-P2d  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dno-Mir-10-P2d  Dpu-Mir-10-P2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Ete-Mir-10-P2d  Gga-Mir-10-P2d  Gja-Mir-10-P2d  Gmo-Mir-10-P2d1  Gmo-Mir-10-P2d2  Hsa-Mir-10-P2d  Isc-Mir-10-P2  Lan-Mir-10-P2  Lch-Mir-10-P2d  Lgi-Mir-10-P2  Loc-Mir-10-P2d  Mal-Mir-10-P2d1  Mal-Mir-10-P2d2  Mdo-Mir-10-P2d  Mml-Mir-10-P2d  Mmu-Mir-10-P2d  Mun-Mir-10-P2d  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2d  Obi-Mir-10-P2  Ocu-Mir-10-P2d  Ovu-Mir-10-P2  Pbv-Mir-10-P2d  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Rno-Mir-10-P2d  Sha-Mir-10-P2d  Sko-Mir-10-P2  Spt-Mir-10-P2d  Sto-Mir-10-P2d  Tca-Mir-10-P2  Tgu-Mir-10-P2d  Tni-Mir-10-P2d1  Tni-Mir-10-P2d2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(chrPic1)
JH584755: 1817175-1817231 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2d)
Mir-10-P2d JH584755: 1817175-1817231 [+] UCSC Ensembl
Let-7-P1d JH584755: 1827954-1828020 [+] UCSC Ensembl
Mir-10-P3d JH584755: 1851132-1851193 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAGGAAGAGAUCAAUGCCCGUUGCCACAAACCCGUAGAUCCGAACUUGUGGUCAUAUUCCACACAAGCUUGUAUCUAUAGGUAUGUGUCUGCAUGGCAAAUGCACAAAACCUGGA
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Structure
        10         20           30        40        50        
AAAAGGAAGAGAUCAAU-   CGU   ---|   A   CG     C   A      GUCAU 
                  GCC   UGC   CACA ACC  UAGAU CGA CUUGUG     \
                  CGG   ACG   GUGU UGG  AUCUA GUU GAACAC     A
AGGUCCAAAACACGUAAA   U--   UCU^   A   AU     U   C      ACCUU 
     110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-10-P2d_5p

mirBase accessionMIMAT0037714
Sequence
0- AACCCGUAGAUCCGAACUUGUG -22
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Star sequence

Cpi-Mir-10-P2d_3p*

mirBase accessionMIMAT0037715
Sequence
35- CAAGCUUGUAUCUAUAGGUAUG -57
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