MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-10-P2d

Family name MIR-10 (all species)
Seed ACCCGUA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-100
Paralogues Mmu-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v2  Mmu-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v2  Mmu-Mir-10-P2b  Mmu-Mir-10-P2c  Mmu-Mir-10-P3b  Mmu-Mir-10-P3c  Mmu-Mir-10-P3d 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2d  Ami-Mir-10-P2d  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2d  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2d  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cli-Mir-10-P2d  Cmi-Mir-10-P2d  Cpi-Mir-10-P2d  Cpo-Mir-10-P2d  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dno-Mir-10-P2d  Dpu-Mir-10-P2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Ete-Mir-10-P2d  Gga-Mir-10-P2d  Gja-Mir-10-P2d  Gmo-Mir-10-P2d1  Gmo-Mir-10-P2d2  Hsa-Mir-10-P2d  Isc-Mir-10-P2  Lan-Mir-10-P2  Lch-Mir-10-P2d  Lgi-Mir-10-P2  Loc-Mir-10-P2d  Mal-Mir-10-P2d1  Mal-Mir-10-P2d2  Mdo-Mir-10-P2d  Mml-Mir-10-P2d  Mun-Mir-10-P2d  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2d  Obi-Mir-10-P2  Ocu-Mir-10-P2d  Ovu-Mir-10-P2  Pbv-Mir-10-P2d  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Rno-Mir-10-P2d  Sha-Mir-10-P2d  Sko-Mir-10-P2  Spt-Mir-10-P2d  Sto-Mir-10-P2d  Tca-Mir-10-P2  Tgu-Mir-10-P2d  Tni-Mir-10-P2d1  Tni-Mir-10-P2d2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(mm10)
chr9: 41531437-41531493 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2d)
Mir-10-P2d chr9: 41531437-41531493 [+] UCSC Ensembl
Let-7-P1d chr9: 41536732-41536798 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGAGAAGACACUGAAGCCUGUUGCCACAAACCCGUAGAUCCGAACUUGUGCUGAUUCUGCACACAAGCUUGUGUCUAUAGGUAUGUGUCUGUUAGGCGAUCCCACAGUCCAGGGG
Get precursor sequence
Structure
        10         20         30        40        50        
CAAGAGAAGACACUGAA-     UUGC-|   A   CG    UC   A      CUGAU 
                  GCCUG     CACA ACC  UAGA  CGA CUUGUG     \
                  CGGAU     GUGU UGG  AUCU  GUU GAACAC     U
GGGGACCUGACACCCUAG     UGUCU^   A   AU    GU   C      ACGUC 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-10-P2d_5p

mirBase accessionMIMAT0000655
Sequence
0- AACCCGUAGAUCCGAACUUGUG -22
Get sequence
Proposed targets microrna.org: MIMAT0000655
TargetScanVert: mmu-miR-100-5p
miRDB: MIMAT0000655
Star sequence

Mmu-Mir-10-P2d_3p*

mirBase accessionMIMAT0017051
Sequence
35- CAAGCUUGUGUCUAUAGGUAUG -57
Get sequence
Proposed targets TargetScanVert: mmu-miR-100-3p
miRDB: MIMAT0017051