Mir-10-P2d

MirGeneDB ID

Hsa-Mir-10-P2d

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-100

Paralogues

Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1b-v2 Hsa-Mir-10-P1c-v1 Hsa-Mir-10-P1c-v2 Hsa-Mir-10-P2b Hsa-Mir-10-P2c Hsa-Mir-10-P3b Hsa-Mir-10-P3c Hsa-Mir-10-P3d

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2d Ami-Mir-10-P2d Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2d Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2d Cgi-Mir-10-P2 Cin-Mir-10-P2 Cli-Mir-10-P2d Cmi-Mir-10-P2d Cpi-Mir-10-P2d Cpo-Mir-10-P2d Cte-Mir-10-P2 Dan-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Ete-Mir-10-P2d Gga-Mir-10-P2d Gja-Mir-10-P2d Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Isc-Mir-10-P2 Lan-Mir-10-P2 Lch-Mir-10-P2d Lgi-Mir-10-P2 Loc-Mir-10-P2d Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mdo-Mir-10-P2d Mml-Mir-10-P2d Mmu-Mir-10-P2d Mun-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2d Ovu-Mir-10-P2 Pbv-Mir-10-P2d Pfl-Mir-10-P2 Pmi-Mir-10-P2 Rno-Mir-10-P2d Sha-Mir-10-P2d Sko-Mir-10-P2 Spt-Mir-10-P2d Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(hg38)

chr11: 122152240-122152296 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2d)

Let-7-P1d chr11: 122146523-122146589 [-] UCSC Ensembl
Mir-10-P2d chr11: 122152240-122152296 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAGAGAAGAUAUUGAGGCCUGUUGCCACAAACCCGUAGAUCCGAACUUGUGGUAUUAGUCCGCACAAGCUUGUAUCUAUAGGUAUGUGUCUGUUAGGCAAUCUCACGGACCUGGGG

Get precursor sequence

Structure

        10         20         30        40        50        
AGAGAGAAGAUAUUGAG-     UUGC-|   A   CG     C   A      GUAUU 
                  GCCUG     CACA ACC  UAGAU CGA CUUGUG     \
                  CGGAU     GUGU UGG  AUCUA GUU GAACAC     A
GGGGUCCAGGCACUCUAA     UGUCU^   A   AU     U   C      GCCUG 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-10-P2d_5p

mirBase accession

MIMAT0000098

Sequence

0- AACCCGUAGAUCCGAACUUGUG -22

Get sequence

Proposed targets

microrna.org: MIMAT0000098
TargetScanVert: hsa-miR-100-5p
TargetMiner: hsa-miR-100-5p
miRDB: MIMAT0000098

Star sequence

Hsa-Mir-10-P2d_3p*

mirBase accession

MIMAT0004512

Sequence

35- CAAGCUUGUAUCUAUAGGUAUG -57

Get sequence

Proposed targets

microrna.org: MIMAT0004512
TargetScanVert: hsa-miR-100-3p
TargetMiner: hsa-miR-100-3p
miRDB: MIMAT0004512