Mir-10-P3d

MirGeneDB ID

Hsa-Mir-10-P3d

Family name

MIR-10 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-125b-1

Paralogues

Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1c-v1 Hsa-Mir-10-P2b Hsa-Mir-10-P2c Hsa-Mir-10-P2d Hsa-Mir-10-P3b Hsa-Mir-10-P3c

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3d Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3d Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3d Cfa-Mir-10-P3d Cin-Mir-10-P3 Cja-Mir-10-P3d Cli-Mir-10-P3d Cmi-Mir-10-P3d Cpi-Mir-10-P3d Cpo-Mir-10-P3d Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3d Dpu-Mir-10-P3 Dre-Mir-10-P3d1 Dre-Mir-10-P3d2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3d Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3d Gga-Mir-10-P3d Gja-Mir-10-P3d Gmo-Mir-10-P3d1 Gmo-Mir-10-P3d2 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Isc-Mir-10-P3 Laf-Mir-10-P3d Lan-Mir-10-P3 Lch-Mir-10-P3d Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3d Mal-Mir-10-P3d1 Mal-Mir-10-P3d2 Mdo-Mir-10-P3d Mgi-Mir-10-P3 Mml-Mir-10-P3d Mmr-Mir-10-P3d Mmu-Mir-10-P3d Mom-Mir-10-P3 Mun-Mir-10-P3d Nag-Mir-10-P3-v1 Neu-Mir-10-P3d Nve-Mir-10 Oan-Mir-10-P3d Obi-Mir-10-P3 Ocu-Mir-10-P3d Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3d Pau-Mir-10-P3 Pbv-Mir-10-P3d Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3d Rph-Mir-10-P3 Sha-Mir-10-P3d Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3d Spu-Mir-10-P3 Sto-Mir-10-P3d Tca-Mir-10-P3 Tgu-Mir-10-P3d Tni-Mir-10-P3d1 Tni-Mir-10-P3d2 War-Mir-10-P3 Xbo-Mir-10-P3 Xla-Mir-10-P3d3 Xla-Mir-10-P3d4 Xtr-Mir-10-P3d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(hg38)

chr11: 122099769-122099830 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3d)

Mir-10-P3d chr11: 122099769-122099830 [-] UCSC Ensembl
Let-7-P1d chr11: 122146523-122146589 [-] UCSC Ensembl

Seed

CCCUGAG

Precursor
(pre-Mir +30nt flank)

AGAAAGAAAACAUUGUUGCGCUCCUCUCAGUCCCUGAGACCCUAACUUGUGAUGUUUACCGUUUAAAUCCACGGGUUAGGCUCUUGGGAGCUGCGAGUCGUGCUUUUGCAUCCUGGAAAUUU

Get precursor sequence

Structure

        10          20        30        40        50        60
AGAAAGAAAACAUUGUU--|   UC   U   UC  UG   C           AUGUUUAC 
                   GCGC  CUC CAG  CC  AGA CCUAACUUGUG        C
                   CGUG  GAG GUC  GG  UCU GGAUUGGGCAC        G
UUUAAAGGUCCUACGUUUU^   CU   C   GA  GU   C           CUAAAUUU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-10-P3d_5p

mirBase accession

MIMAT0000423

Sequence

0- UCCCUGAGACCCUAACUUGUGA -22

Get sequence

Proposed targets

microrna.org: MIMAT0000423
TargetScanVert: hsa-miR-125b-5p
TargetMiner: hsa-miR-125b-5p
miRDB: MIMAT0000423

Star sequence

Hsa-Mir-10-P3d_3p*

mirBase accession

MIMAT0004592

Sequence

40- ACGGGUUAGGCUCUUGGGAGCU -62

Get sequence

Proposed targets

microrna.org: MIMAT0004592
TargetScanVert: hsa-miR-125b-1-3p
TargetMiner: hsa-miR-125b-1-3p
miRDB: MIMAT0004592