Mir-10-P3d

MirGeneDB ID

Hsa-Mir-10-P3d

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-125b-1

Paralogues

Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1b-v2 Hsa-Mir-10-P1c-v1 Hsa-Mir-10-P1c-v2 Hsa-Mir-10-P2b Hsa-Mir-10-P2c Hsa-Mir-10-P2d Hsa-Mir-10-P3b Hsa-Mir-10-P3c

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3d Ami-Mir-10-P3d Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3d Cfa-Mir-10-P3d Cgi-Mir-10-P3 Cin-Mir-10-P3 Cli-Mir-10-P3d Cmi-Mir-10-P3d Cpi-Mir-10-P3d Cpo-Mir-10-P3d Cte-Mir-10-P3 Dan-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3d Dpu-Mir-10-P3 Dre-Mir-10-P3d1 Dre-Mir-10-P3d2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3d Gga-Mir-10-P3d Gja-Mir-10-P3d Gmo-Mir-10-P3d1 Gmo-Mir-10-P3d2 Isc-Mir-10-P3 Lan-Mir-10-P3 Lch-Mir-10-P3d Lgi-Mir-10-P3 Loc-Mir-10-P3d Mal-Mir-10-P3d1 Mal-Mir-10-P3d2 Mdo-Mir-10-P3d Mml-Mir-10-P3d Mmu-Mir-10-P3d Mun-Mir-10-P3d Nve-Mir-10 Oan-Mir-10-P3d Obi-Mir-10-P3 Ocu-Mir-10-P3d Ovu-Mir-10-P3 Pbv-Mir-10-P3d Pmi-Mir-10-P3 Rno-Mir-10-P3d Sha-Mir-10-P3d Sko-Mir-10-P3 Spt-Mir-10-P3d Spu-Mir-10-P3 Sto-Mir-10-P3d Tca-Mir-10-P3 Tgu-Mir-10-P3d Tni-Mir-10-P3d1 Tni-Mir-10-P3d2 Xbo-Mir-10-P3 Xla-Mir-10-P3d3 Xla-Mir-10-P3d4 Xtr-Mir-10-P3d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(hg38)

chr11: 122099769-122099830 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3d)

Mir-10-P3d chr11: 122099769-122099830 [-] UCSC Ensembl
Let-7-P1d chr11: 122146523-122146589 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAAAGAAAACAUUGUUGCGCUCCUCUCAGUCCCUGAGACCCUAACUUGUGAUGUUUACCGUUUAAAUCCACGGGUUAGGCUCUUGGGAGCUGCGAGUCGUGCUUUUGCAUCCUGGAAAUUU

Get precursor sequence

Structure

        10          20        30        40        50        60
AGAAAGAAAACAUUGUU--|   UC   U   UC  UG   C           AUGUUUAC 
                   GCGC  CUC CAG  CC  AGA CCUAACUUGUG        C
                   CGUG  GAG GUC  GG  UCU GGAUUGGGCAC        G
UUUAAAGGUCCUACGUUUU^   CU   C   GA  GU   C           CUAAAUUU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-10-P3d_5p

mirBase accession

MIMAT0000423

Sequence

0- UCCCUGAGACCCUAACUUGUGA -22

Get sequence

Proposed targets

microrna.org: MIMAT0000423
TargetScanVert: hsa-miR-125b-5p
TargetMiner: hsa-miR-125b-5p
miRDB: MIMAT0000423

Star sequence

Hsa-Mir-10-P3d_3p*

mirBase accession

MIMAT0004592

Sequence

40- ACGGGUUAGGCUCUUGGGAGCU -62

Get sequence

Proposed targets

microrna.org: MIMAT0004592
TargetScanVert: hsa-miR-125b-1-3p
TargetMiner: hsa-miR-125b-1-3p
miRDB: MIMAT0004592