MirGeneDB 2.1
MirGeneDB ID

Gja-Mir-10-P3d

Family name MIR-10 (all species)
Seed CCCUGAG
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-10-P1b-v1  Gja-Mir-10-P1b-v2  Gja-Mir-10-P1c-v1  Gja-Mir-10-P1c-v2  Gja-Mir-10-P1d-v1  Gja-Mir-10-P1d-v2  Gja-Mir-10-P2b  Gja-Mir-10-P2c  Gja-Mir-10-P2d  Gja-Mir-10-P3b  Gja-Mir-10-P3c 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3d  Ami-Mir-10-P3d  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3d  Cfa-Mir-10-P3d  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3d  Cpo-Mir-10-P3d  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3d  Gga-Mir-10-P3d  Gmo-Mir-10-P3d1  Gmo-Mir-10-P3d2  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Loc-Mir-10-P3d  Mal-Mir-10-P3d1  Mal-Mir-10-P3d2  Mdo-Mir-10-P3d  Mml-Mir-10-P3d  Mmu-Mir-10-P3d  Mun-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3d  Ovu-Mir-10-P3  Pbv-Mir-10-P3d  Pmi-Mir-10-P3  Rno-Mir-10-P3d  Sha-Mir-10-P3d  Sko-Mir-10-P3  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3d  Tni-Mir-10-P3d1  Tni-Mir-10-P3d2  Xbo-Mir-10-P3  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4  Xtr-Mir-10-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015160857.1: 722236-722297 [+]
Precursor
(pre-Mir +30nt flank)
AGGAGUGACCCUGGACUGCGCCCCUCUCUGUCCCUGAGACCCUAACUUGUGACGUUUCGUUUUUAAGUCCACGGGUUAGGCUCUUGGGAGCUGUGAGUUGUGCCACUGCAUCUUUCCGAAGU
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Structure
        10          20        30        40        50        60
AGGAGUGACCCUGGACU--|   CC   UCU UC  UG   C           ACGUUUCG 
                   GCGC  CUC   G  CC  AGA CCUAACUUGUG        U
                   CGUG  GAG   C  GG  UCU GGAUUGGGCAC        U
UGAAGCCUUUCUACGUCAC^   UU   UGU GA  GU   C           CUGAAUUU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-10-P3d_5p
mirBase accessionNone
Sequence 
0- UCCCUGAGACCCUAACUUGUGA -22
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Star sequence

Gja-Mir-10-P3d_3p*
mirBase accessionNone
Sequence 
40- ACGGGUUAGGCUCUUGGGAGCU -62
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