MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-10-P3d4

Family name MIR-10 (all species)
Seed CCCUGAG
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-125b
Paralogues Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b3-v2  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1b4-v2  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c3-v2  Xla-Mir-10-P1c4-v1  Xla-Mir-10-P1c4-v2  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d3-v2  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P1d4-v2  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2  Xla-Mir-10-P2c3  Xla-Mir-10-P2c4  Xla-Mir-10-P3b  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xla-Mir-10-P3d3 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3d  Ami-Mir-10-P3d  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3d  Cfa-Mir-10-P3d  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3d  Cpo-Mir-10-P3d  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3d  Gga-Mir-10-P3d  Gja-Mir-10-P3d  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Loc-Mir-10-P3d  Mdo-Mir-10-P3d  Mml-Mir-10-P3d  Mmu-Mir-10-P3d  Mun-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3d  Ovu-Mir-10-P3  Pbv-Mir-10-P3d  Pmi-Mir-10-P3  Rno-Mir-10-P3d  Sha-Mir-10-P3d  Sko-Mir-10-P3  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3d  Xbo-Mir-10-P3  Xtr-Mir-10-P3d 
Node of Origin (locus) X. laevis
Node of Origin (family) Eumetazoa
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030737.1: 54255919-54255981 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCAUUCGGUAGCUUUGCACCCCUCUCAAUCCCUGAGACCCUAACUUGUGAUGUUUAGCUUUAAAAAUCCACGGGUUAGGCUCUUGGGAGCUGUGAGUUGUGCCCUUGCAUCUAAUAUAGAG
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Structure
        10          20        30         40        50        60 
GUGCAUUCGGUAGCUUU--    CC   U  A-|   U    C           AUGUUUAGC 
                   GCAC  CUC CA  UCCC GAGA CCUAACUUGUG         \
                   CGUG  GAG GU  AGGG UUCU GGAUUGGGCAC         U
GAGAUAUAAUCUACGUUCC    UU   U  CG^   -    C           CUAAAAAUU 
 120       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-10-P3d4_5p
mirBase accessionMIMAT0046433
Sequence 
0- UCCCUGAGACCCUAACUUGUGA -22
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Star sequence

Xla-Mir-10-P3d4_3p*
mirBase accessionMIMAT0046434
Sequence 
41- ACGGGUUAGGCUCUUGGGAGCU -63
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