Mir-10-P1c3-v1

MirGeneDB ID

Xla-Mir-10-P1c3

Family name

MIR-10 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-10a

Paralogues

Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b4-v1 Xla-Mir-10-P1c4-v1 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d4-v1 Xla-Mir-10-P2b1 Xla-Mir-10-P2b2 Xla-Mir-10-P2c3 Xla-Mir-10-P2c4 Xla-Mir-10-P3b Xla-Mir-10-P3c3 Xla-Mir-10-P3c4 Xla-Mir-10-P3d3 Xla-Mir-10-P3d4

Orthologues

Aae-Mir-10-P1-v1 Aca-Mir-10-P1c-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Ami-Mir-10-P1c-v1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bge-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Bta-Mir-10-P1c-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1c-v1 Cja-Mir-10-P1c-v1 Cli-Mir-10-P1c-v1 Cmi-Mir-10-P1c-v1 Cpi-Mir-10-P1c-v1 Cpo-Mir-10-P1c-v1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1c-v1 Dpu-Mir-10-P1-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Eca-Mir-10-P1c-v1 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1c-v1 Gga-Mir-10-P1c-v1 Gja-Mir-10-P1c-v1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hru-Mir-10-P1 Hsa-Mir-10-P1c-v1 Isc-Mir-10-P1-v1 Laf-Mir-10-P1c-v1 Lch-Mir-10-P1c Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1c-v1 Mdo-Mir-10-P1c-v1 Mgi-Mir-10-P1 Mml-Mir-10-P1c-v1 Mmr-Mir-10-P1c-v1 Mmu-Mir-10-P1c-v1 Mom-Mir-10-P1 Mun-Mir-10-P1c-v1 Neu-Mir-10-P1c-v1 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1c-v1 Ocu-Mir-10-P1c-v1 Ofu-Mir-10-P1 Pab-Mir-10-P1c-v1 Pau-Mir-10-P1 Pbv-Mir-10-P1c-v1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1c-v1 Rph-Mir-10-P1 Sha-Mir-10-P1c-v1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spt-Mir-10-P1c Spu-Mir-10-P1 Sto-Mir-10-P1c-v1 Tca-Mir-10-P1-v1 Tgu-Mir-10-P1c-v1 War-Mir-10-P1 Xbo-Mir-10-P1 Xtr-Mir-10-P1c-v1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Eumetazoa

Genome context
(GCF_001663975.1_XLA_v2)

NC_030740.1: 3499572-3499633 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1c3-v1)

Mir-10-P1c3-v1 NC_030740.1: 3499572-3499633 [-] UCSC Ensembl
Mir-10-P1c3-v2 NC_030740.1: 3499573-3499632 [-] UCSC Ensembl

Variant

Xla-Mir-10-P1c3-v1

Seed

ACCCUGU

Precursor
(pre-Mir +30nt flank)

AUAUUUGCAGACUUGCCUGUCCUCUGUAUGUACCCUGUAGAUCCGAAUUUGUGUGAGCGCAAUCAUAUCACAAAUUCGUGUCUGGGGGGAUAUGCAGUUGACACAAACGCUACAGAAAGACG

Get precursor sequence

Structure

        10          20        30        40        50        60 
AUAUUUGCAGACUUGCC--|   CU        A    G    UC          UGAGCGC 
                   UGUC  CUGUAUGU CCCU UAGA  CGAAUUUGUG       \
                   ACAG  GACGUAUA GGGG GUCU  GCUUAAACAC       A
GCAGAAAGACAUCGCAAAC^   UU        -    G    GU          UAUACUA 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-10-P1c3-v1_5p

mirBase accession

MIMAT0046422

Sequence

0- UACCCUGUAGAUCCGAAUUUGUG -23

Get sequence

Star sequence

Xla-Mir-10-P1c3-v1_3p*

mirBase accession

MIMAT0046423

Sequence

40- CAAAUUCGUGUCUGGGGGGAUA -62

Get sequence

Variant

Xla-Mir-10-P1c3-v2

Seed

CCCUGUA

Precursor
(pre-Mir +30nt flank)

UAUUUGCAGACUUGCCUGUCCUCUGUAUGUACCCUGUAGAUCCGAAUUUGUGUGAGCGCAAUCAUAUCACAAAUUCGUGUCUGGGGGGAUAUGCAGUUGACACAAACGCUACAGAAAGAC

Get precursor sequence

Structure

        10          20        30        40        50          
UAUUUGCAGACUUGCCU--|  CU        A    G    UC          UGAGCGC 
                   GUC  CUGUAUGU CCCU UAGA  CGAAUUUGUG       \
                   CAG  GACGUAUA GGGG GUCU  GCUUAAACAC       A
CAGAAAGACAUCGCAAACA^  UU        -    G    GU          UAUACUA 
.       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-10-P1c3-v2_5p

mirBase accession

MIMAT0046422

Sequence

0- ACCCUGUAGAUCCGAAUUUGUGU -23

Get sequence

Star sequence

Xla-Mir-10-P1c3-v2_3p*

mirBase accession

MIMAT0046423

Sequence

38- ACAAAUUCGUGUCUGGGGGGAU -60

Get sequence