Mir-10-P1c-v1

MirGeneDB ID

Laf-Mir-10-P1c

Family name

MIR-10 (all species)

Species

African bush elephant (Loxodonta africana)

MiRBase ID

Paralogues

Laf-Mir-10-P1b Laf-Mir-10-P2b Laf-Mir-10-P2c Laf-Mir-10-P2d Laf-Mir-10-P3b Laf-Mir-10-P3c Laf-Mir-10-P3d

Orthologues

Aae-Mir-10-P1-v1 Aca-Mir-10-P1c-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Ami-Mir-10-P1c-v1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bge-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Bta-Mir-10-P1c-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1c-v1 Cja-Mir-10-P1c-v1 Cli-Mir-10-P1c-v1 Cmi-Mir-10-P1c-v1 Cpi-Mir-10-P1c-v1 Cpo-Mir-10-P1c-v1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1c-v1 Dpu-Mir-10-P1-v1 Dre-Mir-10-P1c1-v1 Dre-Mir-10-P1c2-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Eca-Mir-10-P1c-v1 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1c-v1 Gga-Mir-10-P1c-v1 Gja-Mir-10-P1c-v1 Gmo-Mir-10-P1c1-v1 Gmo-Mir-10-P1c2-v1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hru-Mir-10-P1 Hsa-Mir-10-P1c-v1 Isc-Mir-10-P1-v1 Lch-Mir-10-P1c Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1c-v1 Mal-Mir-10-P1c1-v1 Mal-Mir-10-P1c2a-v1 Mal-Mir-10-P1c2b-v1 Mdo-Mir-10-P1c-v1 Mgi-Mir-10-P1 Mml-Mir-10-P1c-v1 Mmr-Mir-10-P1c-v1 Mmu-Mir-10-P1c-v1 Mom-Mir-10-P1 Mun-Mir-10-P1c-v1 Neu-Mir-10-P1c-v1 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1c-v1 Ocu-Mir-10-P1c-v1 Ofu-Mir-10-P1 Pab-Mir-10-P1c-v1 Pau-Mir-10-P1 Pbv-Mir-10-P1c-v1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1c-v1 Rph-Mir-10-P1 Sha-Mir-10-P1c-v1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spt-Mir-10-P1c Spu-Mir-10-P1 Sto-Mir-10-P1c-v1 Tca-Mir-10-P1-v1 Tgu-Mir-10-P1c-v1 Tni-Mir-10-P1c1-v1 Tni-Mir-10-P1c2-v1 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1c3-v1 Xla-Mir-10-P1c4-v1 Xtr-Mir-10-P1c-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(GCA_000001905.1_Loxafr3.0)

GL010058.1: 19766950-19767012 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1c-v1)

Mir-10-P1c-v1 GL010058.1: 19766950-19767012 [+] UCSC Ensembl
Mir-10-P1c-v2 GL010058.1: 19766951-19767011 [+] UCSC Ensembl

Variant

Laf-Mir-10-P1c-v1

Seed

ACCCUGU

Precursor
(pre-Mir +30nt flank)

GGCCAAGAAGAUCUGUCUGUCUUCUGUAUAUACCCUGUAGAUCCGAAUUUGUGUAAGGAAUUUUGUGAUCACAAAUUCGUAUCUAGGGGAAUAUGUAGUUGACAUAAACACUCCGCUCAUUUU

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGCCAAGAAGAUCUGUC--|   UU        A    G     C         GUAAGGAA 
                   UGUC  CUGUAUAU CCCU UAGAU CGAAUUUGU        U
                   ACAG  GAUGUAUA GGGG AUCUA GCUUAAACA        U
UUUUACUCGCCUCACAAAU^   UU        A    -     U         CUAGUGUU 
 120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Wh

Mature sequence

Laf-Mir-10-P1c-v1_5p

mirBase accession

None

Sequence

0- UACCCUGUAGAUCCGAAUUUGU -22

Get sequence

Star sequence

Laf-Mir-10-P1c-v1_3p* (predicted)

mirBase accession

None

Sequence

42- AAAUUCGUAUCUAGGGGAAUA -63

Get sequence

Variant

Laf-Mir-10-P1c-v2

Seed

CCCUGUA

Precursor
(pre-Mir +30nt flank)

GCCAAGAAGAUCUGUCUGUCUUCUGUAUAUACCCUGUAGAUCCGAAUUUGUGUAAGGAAUUUUGUGAUCACAAAUUCGUAUCUAGGGGAAUAUGUAGUUGACAUAAACACUCCGCUCAUUU

Get precursor sequence

Structure

        10          20        30        40        50        60
GCCAAGAAGAUCUGUCU--|  UU        A    G     C          UAAGGAA 
                   GUC  CUGUAUAU CCCU UAGAU CGAAUUUGUG       U
                   CAG  GAUGUAUA GGGG AUCUA GCUUAAACAC       U
UUUACUCGCCUCACAAAUA^  UU        A    -     U          UAGUGUU 
 .       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Wh

Mature sequence

Laf-Mir-10-P1c-v2_5p

mirBase accession

None

Sequence

0- ACCCUGUAGAUCCGAAUUUGUG -22

Get sequence

Star sequence

Laf-Mir-10-P1c-v2_3p*

mirBase accession

None

Sequence

40- CAAAUUCGUAUCUAGGGGAAU -61

Get sequence