Mir-10-P1c1-v1

MirGeneDB ID

Gmo-Mir-10-P1c1

Family name

MIR-10 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-10c

Paralogues

Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1c2-v1 Gmo-Mir-10-P1d1-v1 Gmo-Mir-10-P2c2 Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Gmo-Mir-10-P3c2 Gmo-Mir-10-P3d1 Gmo-Mir-10-P3d2

Orthologues

Aae-Mir-10-P1-v1 Aca-Mir-10-P1c-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Ami-Mir-10-P1c-v1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bge-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Bta-Mir-10-P1c-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1c-v1 Cja-Mir-10-P1c-v1 Cli-Mir-10-P1c-v1 Cmi-Mir-10-P1c-v1 Cpi-Mir-10-P1c-v1 Cpo-Mir-10-P1c-v1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1c-v1 Dpu-Mir-10-P1-v1 Dre-Mir-10-P1c1-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Eca-Mir-10-P1c-v1 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1c-v1 Gga-Mir-10-P1c-v1 Gja-Mir-10-P1c-v1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hru-Mir-10-P1 Hsa-Mir-10-P1c-v1 Isc-Mir-10-P1-v1 Laf-Mir-10-P1c-v1 Lch-Mir-10-P1c Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1c-v1 Mal-Mir-10-P1c1-v1 Mdo-Mir-10-P1c-v1 Mgi-Mir-10-P1 Mml-Mir-10-P1c-v1 Mmr-Mir-10-P1c-v1 Mmu-Mir-10-P1c-v1 Mom-Mir-10-P1 Mun-Mir-10-P1c-v1 Neu-Mir-10-P1c-v1 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1c-v1 Ocu-Mir-10-P1c-v1 Ofu-Mir-10-P1 Pab-Mir-10-P1c-v1 Pau-Mir-10-P1 Pbv-Mir-10-P1c-v1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1c-v1 Rph-Mir-10-P1 Sha-Mir-10-P1c-v1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spt-Mir-10-P1c Spu-Mir-10-P1 Sto-Mir-10-P1c-v1 Tca-Mir-10-P1-v1 Tgu-Mir-10-P1c-v1 Tni-Mir-10-P1c1-v1 War-Mir-10-P1 Xbo-Mir-10-P1 Xtr-Mir-10-P1c-v1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_3558: 107634-107699 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1c1-v1)

Mir-10-P1c1-v1 GeneScaffold_3558: 107634-107699 [+] UCSC Ensembl
Mir-10-P1c1-v2 GeneScaffold_3558: 107635-107698 [+] UCSC Ensembl

Variant

Gmo-Mir-10-P1c1-v1

Seed

ACCCUGU

Precursor
(pre-Mir +30nt flank)

CAGCUCCAGAGAUCCGCUGUCUUCUAUAUCUACCCUGUAGAUCCGGAUUUGUGUGAAAACUGCUACACCAAUCACAAAUUCGCUUCUAGGGGAGUAUAUAGUUGAUUUGAACACUACGGCAGCAGU

Get precursor sequence

Structure

        10          20         30        40        50        60   
CAGCUCCAGAGAUCCGCU--   UU      -| A    G    UC         GUGAAAACUG 
                    GUC  CUAUAU CU CCCU UAGA  CGGAUUUGU          \
                    UAG  GAUAUA GA GGGG AUCU  GCUUAAACA          C
UGACGACGGCAUCACAAGUU   UU      U^ -    -    UC         CUAACCACAU 
    120       110       100         90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-10-P1c1-v1_5p

mirBase accession

MIMAT0044225

Sequence

0- UACCCUGUAGAUCCGGAUUUGU -22

Get sequence

Star sequence

Gmo-Mir-10-P1c1-v1_3p*

mirBase accession

MIMAT0044226

Sequence

44- CAAAUUCGCUUCUAGGGGAGUA -66

Get sequence

Variant

Gmo-Mir-10-P1c1-v2

Seed

CCCUGUA

Precursor
(pre-Mir +30nt flank)

AGCUCCAGAGAUCCGCUGUCUUCUAUAUCUACCCUGUAGAUCCGGAUUUGUGUGAAAACUGCUACACCAAUCACAAAUUCGCUUCUAGGGGAGUAUAUAGUUGAUUUGAACACUACGGCAGCAG

Get precursor sequence

Structure

        10          20         30        40        50        60  
AGCUCCAGAGAUCCGCU--   UU      -| A    G    UC          UGAAAACUG 
                   GUC  CUAUAU CU CCCU UAGA  CGGAUUUGUG         \
                   UAG  GAUAUA GA GGGG AUCU  GCUUAAACAC         C
GACGACGGCAUCACAAGUU   UU      U^ -    -    UC          UAACCACAU 
  120       110       100         90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-10-P1c1-v2_5p

mirBase accession

MIMAT0044225

Sequence

0- ACCCUGUAGAUCCGGAUUUGUG -22

Get sequence

Star sequence

Gmo-Mir-10-P1c1-v2_3p*

mirBase accession

MIMAT0044226

Sequence

42- ACAAAUUCGCUUCUAGGGGAGU -64

Get sequence