MirGeneDB ID | Gmo-Mir-10-P1c1 |
Family name |
MIR-10 (all species) |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-10c
|
Paralogues |
Gmo-Mir-10-P1b1-v1
Gmo-Mir-10-P1b2-v1
Gmo-Mir-10-P1c1-v1
Gmo-Mir-10-P1c2-v1
Gmo-Mir-10-P1d1-v1
Gmo-Mir-10-P2c2
Gmo-Mir-10-P2d1
Gmo-Mir-10-P2d2
Gmo-Mir-10-P3b1
Gmo-Mir-10-P3b2
Gmo-Mir-10-P3c2
Gmo-Mir-10-P3d1
Gmo-Mir-10-P3d2
|
Orthologues |
Aae-Mir-10-P1-v1
Aca-Mir-10-P1c-v1
Adi-Mir-10
Aga-Mir-10-P1-v1
Agr-Mir-10-P1
Ami-Mir-10-P1c-v1
Asp-Mir-10
Asu-Mir-10-P1
Bfl-Mir-10-P1-v1
Bge-Mir-10-P1-v1
Bla-Mir-10-P1-v1
Bta-Mir-10-P1c-v1
Cbr-Mir-10-P1
Cel-Mir-10-P1
Cfa-Mir-10-P1c-v1
Cja-Mir-10-P1c-v1
Cli-Mir-10-P1c-v1
Cmi-Mir-10-P1c-v1
Cpi-Mir-10-P1c-v1
Cpo-Mir-10-P1c-v1
Cte-Mir-10-P1
Dan-Mir-10-P1
Dgr-Mir-10-P1
Dlo-Mir-10-P1-v1
Dma-Mir-10-P1-v1
Dme-Mir-10-P1
Dmo-Mir-10-P1
Dno-Mir-10-P1c-v1
Dpu-Mir-10-P1-v1
Dre-Mir-10-P1c1-v1
Dsi-Mir-10-P1
Dya-Mir-10-P1
Eba-Mir-10-P1
Eca-Mir-10-P1c-v1
Efe-Mir-10-P1
Egr-Mir-10-P1
Ete-Mir-10-P1c-v1
Gga-Mir-10-P1c-v1
Gja-Mir-10-P1c-v1
Gpa-Mir-10-P1
Gsp-Mir-10-P1
Hme-Mir-10-P1-v1
Hru-Mir-10-P1
Hsa-Mir-10-P1c-v1
Isc-Mir-10-P1-v1
Laf-Mir-10-P1c-v1
Lch-Mir-10-P1c
Lgi-Mir-10-P1
Lhy-Mir-10-P1
Llo-Mir-10-P1
Loc-Mir-10-P1c-v1
Mal-Mir-10-P1c1-v1
Mdo-Mir-10-P1c-v1
Mgi-Mir-10-P1
Mml-Mir-10-P1c-v1
Mmr-Mir-10-P1c-v1
Mmu-Mir-10-P1c-v1
Mom-Mir-10-P1
Mun-Mir-10-P1c-v1
Neu-Mir-10-P1c-v1
Npo-Mir-10-P1
Nve-Mir-10
Oan-Mir-10-P1c-v1
Ocu-Mir-10-P1c-v1
Ofu-Mir-10-P1
Pab-Mir-10-P1c-v1
Pau-Mir-10-P1
Pbv-Mir-10-P1c-v1
Pca-Mir-10-P1
Pdu-Mir-10-P1
Pfl-Mir-10-P1
Pmi-Mir-10-P1
Pve-Mir-10-P1
Rno-Mir-10-P1c-v1
Rph-Mir-10-P1
Sha-Mir-10-P1c-v1
Sko-Mir-10-P1
Sma-Mir-10-P1
Snu-Mir-10-P1
Spt-Mir-10-P1c
Spu-Mir-10-P1
Sto-Mir-10-P1c-v1
Tca-Mir-10-P1-v1
Tgu-Mir-10-P1c-v1
Tni-Mir-10-P1c1-v1
War-Mir-10-P1
Xbo-Mir-10-P1
Xtr-Mir-10-P1c-v1
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_3558: 107635-107698 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-10-P1c1-v2) |
Mir-10-P1c1-v1
GeneScaffold_3558: 107634-107699 [+]
UCSC
Ensembl
Mir-10-P1c1-v2
GeneScaffold_3558: 107635-107698 [+]
UCSC
Ensembl
|
Variant | Gmo-Mir-10-P1c1-v2 |
Seed |
CCCUGUA |
Precursor (pre-Mir +30nt flank) |
AGCUCCAGAGAUCCGCUGUCUUCUAUAUCUACCCUGUAGAUCCGGAUUUGUGUGAAAACUGCUACACCAAUCACAAAUUCGCUUCUAGGGGAGUAUAUAGUUGAUUUGAACACUACGGCAGCAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGCUCCAGAGAUCCGCU-- UU -| A G UC UGAAAACUG
GUC CUAUAU CU CCCU UAGA CGGAUUUGUG \
UAG GAUAUA GA GGGG AUCU GCUUAAACAC C
GACGACGGCAUCACAAGUU UU U^ - - UC UAACCACAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Gmo-Mir-10-P1c1-v2_5p |
mirBase accession | MIMAT0044225 |
Sequence |
0- ACCCUGUAGAUCCGGAUUUGUG -22
Get sequence
|
Star sequence |
Gmo-Mir-10-P1c1-v2_3p* |
mirBase accession | MIMAT0044226 |
Sequence |
42- ACAAAUUCGCUUCUAGGGGAGU -64
Get sequence
|
Variant | Gmo-Mir-10-P1c1-v1 |
Seed |
ACCCUGU |
Precursor (pre-Mir +30nt flank) |
CAGCUCCAGAGAUCCGCUGUCUUCUAUAUCUACCCUGUAGAUCCGGAUUUGUGUGAAAACUGCUACACCAAUCACAAAUUCGCUUCUAGGGGAGUAUAUAGUUGAUUUGAACACUACGGCAGCAGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAGCUCCAGAGAUCCGCU-- UU -| A G UC GUGAAAACUG
GUC CUAUAU CU CCCU UAGA CGGAUUUGU \
UAG GAUAUA GA GGGG AUCU GCUUAAACA C
UGACGACGGCAUCACAAGUU UU U^ - - UC CUAACCACAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Gmo-Mir-10-P1c1-v1_5p |
mirBase accession | MIMAT0044225 |
Sequence |
0- UACCCUGUAGAUCCGGAUUUGU -22
Get sequence
|
Star sequence |
Gmo-Mir-10-P1c1-v1_3p* |
mirBase accession | MIMAT0044226 |
Sequence |
44- CAAAUUCGCUUCUAGGGGAGUA -66
Get sequence
|