MirGeneDB

MirGeneDB ID

Lgi-Mir-10-P1

Family name MIR-10 (all species)
Seed ACCCUGU
Species Owl limpet (Lottia gigantea)
MiRBase ID lgi-mir-10
Paralogues Lgi-Mir-10-P2  Lgi-Mir-10-P3  Lgi-Mir-10-P5  Lgi-Mir-10-P6 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1a-v1  Aca-Mir-10-P1a-v2  Aca-Mir-10-P1b-v1  Aca-Mir-10-P1b-v2  Aca-Mir-10-P1c-v1  Aca-Mir-10-P1c-v2  Ami-Mir-10-P1a-v1  Ami-Mir-10-P1a-v2  Ami-Mir-10-P1b-v1  Ami-Mir-10-P1b-v2  Ami-Mir-10-P1c-v1  Ami-Mir-10-P1c-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bta-Mir-10-P1a-v1  Bta-Mir-10-P1a-v2  Bta-Mir-10-P1b-v1  Bta-Mir-10-P1b-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1a-v1  Cfa-Mir-10-P1a-v2  Cfa-Mir-10-P1b-v1  Cfa-Mir-10-P1b-v2  Cgi-Mir-10-P1  Cli-Mir-10-P1a-v1  Cli-Mir-10-P1a-v2  Cli-Mir-10-P1b-v1  Cli-Mir-10-P1b-v2  Cli-Mir-10-P1c-v1  Cli-Mir-10-P1c-v2  Cpi-Mir-10-P1a-v1  Cpi-Mir-10-P1a-v2  Cpi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v2  Cpi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v2  Cpo-Mir-10-P1a-v1  Cpo-Mir-10-P1a-v2  Cpo-Mir-10-P1b-v1  Cpo-Mir-10-P1b-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1a-v1  Dno-Mir-10-P1a-v2  Dno-Mir-10-P1b-v1  Dno-Mir-10-P1b-v2  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1a1-v1  Dre-Mir-10-P1a1-v2  Dre-Mir-10-P1a2-v1  Dre-Mir-10-P1a2-v2  Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b1-v2  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1b2-v2  Dre-Mir-10-P1c-v1  Dre-Mir-10-P1c-v2  Efe-Mir-10-P1e  Efe-Mir-10-P1f  Ete-Mir-10-P1a-v1  Ete-Mir-10-P1a-v2  Ete-Mir-10-P1b-v1  Ete-Mir-10-P1b-v2  Gga-Mir-10-P1a-v1  Gga-Mir-10-P1a-v2  Gga-Mir-10-P1b-v1  Gga-Mir-10-P1b-v2  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hsa-Mir-10-P1a-v1  Hsa-Mir-10-P1a-v2  Hsa-Mir-10-P1b-v1  Hsa-Mir-10-P1b-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lan-Mir-10-P1g  Lan-Mir-10-P1h  Mdo-Mir-10-P1a-v1  Mdo-Mir-10-P1a-v2  Mdo-Mir-10-P1b-v1  Mdo-Mir-10-P1b-v2  Mml-Mir-10-P1a-v1  Mml-Mir-10-P1a-v2  Mml-Mir-10-P1b-v1  Mml-Mir-10-P1b-v2  Mmu-Mir-10-P1a-v1  Mmu-Mir-10-P1a-v2  Mmu-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v2  Oan-Mir-10-P1a-v1  Oan-Mir-10-P1a-v2  Oan-Mir-10-P1b-v1  Oan-Mir-10-P1b-v2  Ocu-Mir-10-P1a-v1  Ocu-Mir-10-P1a-v2  Ocu-Mir-10-P1b-v1  Ocu-Mir-10-P1b-v2  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Rno-Mir-10-P1a-v1  Rno-Mir-10-P1a-v2  Rno-Mir-10-P1b-v1  Rno-Mir-10-P1b-v2  Sha-Mir-10-P1a-v1  Sha-Mir-10-P1a-v2  Sha-Mir-10-P1b-v1  Sha-Mir-10-P1b-v2  Sko-Mir-10-P1  Spu-Mir-10-P1  Sto-Mir-10-P1a-v1  Sto-Mir-10-P1a-v2  Sto-Mir-10-P1b-v1  Sto-Mir-10-P1b-v2  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tgu-Mir-10-P1a-v1  Tgu-Mir-10-P1a-v2  Tgu-Mir-10-P1b-v1  Tgu-Mir-10-P1b-v2  Xtr-Mir-10-P1a-v1  Xtr-Mir-10-P1a-v2  Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1b-v2  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1c-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Eumetazoa
Genome context
(Lotgi1)
LOTGIsca_12: 2577679-2577737 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAUAGCAGCUGAAUAUUGUGCCUUUACGUUUACCCUGUAGAUCCGAAUUUGUGUAUGAAACAAUCUACAAAUUCGUUUUUGCGGGUGAUUGUGUCGAGGUUUUCAAAAUCAUCAGACAA
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Structure
        10        20          30        40        50         
GAUAGCAGCUGAAUAUUGU     --|   U      U     UC         GUAUGA 
                   GCCUU  UACG UUACCC GUAGA  CGAAUUUGU      A
                   UGGAG  GUGU AGUGGG CGUUU  GCUUAAACA      A
AACAGACUACUAAAACUUU     CU^   U      -     UU         UCUAAC 
       110       100        90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
To
Mature sequence

Lgi-Mir-10-P1_5p

MirBase accessionMIMAT0009563
Sequence
0- UACCCUGUAGAUCCGAAUUUGU -22
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Star sequence

Lgi-Mir-10-P1_3p* (predicted)

MirBase accessionNone
Sequence
38- AAAUUCGUUUUUGCGGGUGAU -59
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