Mir-10-P1e

MirGeneDB ID

Ebu-Mir-10-P1e

Family name

MIR-10 (all species)

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-10-P1f Ebu-Mir-10-P2e Ebu-Mir-10-P2f Ebu-Mir-10-P3e Ebu-Mir-10-P3f

Orthologues

Aae-Mir-10-P1-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bge-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Efe-Mir-10-P1 Egr-Mir-10-P1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hru-Mir-10-P1 Isc-Mir-10-P1-v1 Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Mgi-Mir-10-P1 Mom-Mir-10-P1 Npo-Mir-10-P1 Nve-Mir-10 Ofu-Mir-10-P1 Pau-Mir-10-P1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rph-Mir-10-P1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 War-Mir-10-P1 Xbo-Mir-10-P1

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Eumetazoa

Genome context
(Eburgeri_3)

FYBX02009525.1: 1611917-1611978 [-] UCSC Ensembl

Seed

ACCCUGU

Precursor
(pre-Mir +30nt flank)

GUGGGCCCACCGGGUUUGAUAUAGCCCGCAUACCCUGUAGGUACGACCUUGUGUGCCUAAUACAGUUUACGAGGUUGUGACUACAGUGUAUGCGUCGCUAAUGUCUCGCACUGCUCUGGGGC

Get precursor sequence

Structure

        10        20          30        40        50        60
GUGGGCCCACCGGGUUUGAUA-    C-|      C      G            UGCCUA 
                      UAGC  CGCAUAC CUGUAG UACGACCUUGUG      A
                      AUCG  GCGUAUG GACAUC GUGUUGGAGCAU      U
CGGGGUCUCGUCACGCUCUGUA    CU^      U      A            UUGACA 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

To

Mature sequence

Ebu-Mir-10-P1e_5p

mirBase accession

None

Sequence

0- UACCCUGUAGGUACGACCUUGUG -23

Get sequence

Star sequence

Ebu-Mir-10-P1e_3p* (predicted)

mirBase accession

None

Sequence

39- CGAGGUUGUGACUACAGUGUAUG -62

Get sequence