Mir-10-P1e

MirGeneDB ID

Ebu-Mir-10-P1e

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-10-P1f Ebu-Mir-10-P2e Ebu-Mir-10-P2f Ebu-Mir-10-P3e Ebu-Mir-10-P3f

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cgi-Mir-10-P1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lgi-Mir-10-P1 Npo-Mir-10-P1 Nve-Mir-10 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Sko-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Eumetazoa

Genome context
(Eburgeri_3)

FYBX02009525.1: 1611917-1611978 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGGGCCCACCGGGUUUGAUAUAGCCCGCAUACCCUGUAGGUACGACCUUGUGUGCCUAAUACAGUUUACGAGGUUGUGACUACAGUGUAUGCGUCGCUAAUGUCUCGCACUGCUCUGGGGC

Get precursor sequence

Structure

        10        20          30        40        50        60
GUGGGCCCACCGGGUUUGAUA-    C-|      C      G            UGCCUA 
                      UAGC  CGCAUAC CUGUAG UACGACCUUGUG      A
                      AUCG  GCGUAUG GACAUC GUGUUGGAGCAU      U
CGGGGUCUCGUCACGCUCUGUA    CU^      U      A            UUGACA 
120       110       100        90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

To

Mature sequence

Ebu-Mir-10-P1e_5p

mirBase accession

None

Sequence

0- UACCCUGUAGGUACGACCUUGUG -23

Get sequence

Star sequence

Ebu-Mir-10-P1e_3p* (predicted)

mirBase accession

None

Sequence

39- CGAGGUUGUGACUACAGUGUAUG -62

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