MirGeneDB ID | Ebu-Mir-10-P2f |
Family name |
MIR-10 (all species) |
Seed |
ACCCGUA |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-10-P1e
Ebu-Mir-10-P1f
Ebu-Mir-10-P2e
Ebu-Mir-10-P3e
Ebu-Mir-10-P3f
|
Orthologues |
Aae-Mir-10-P2
Bfl-Mir-10-P2-v1
Bfl-Mir-10-P2-v2
Bge-Mir-10-P2
Bla-Mir-10-P2-v1
Bla-Mir-10-P2-v2
Bpl-Mir-10-P2
Cbr-Mir-10-P2
Cel-Mir-10-P2
Cgi-Mir-10-P2
Cin-Mir-10-P2
Cte-Mir-10-P2
Dan-Mir-10-P2
Dma-Mir-10-P2
Dme-Mir-10-P2
Dmo-Mir-10-P2
Dpu-Mir-10-P2
Dsi-Mir-10-P2
Dya-Mir-10-P2
Isc-Mir-10-P2
Lan-Mir-10-P2
Lgi-Mir-10-P2
Npo-Mir-10-P2
Nve-Mir-10
Obi-Mir-10-P2
Ovu-Mir-10-P2
Pfl-Mir-10-P2
Pmi-Mir-10-P2
Sko-Mir-10-P2
Tca-Mir-10-P2
Xbo-Mir-10-P2
Xbo-Mir-10-P2-as
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Eburgeri_3) |
FYBX02010565.1: 1875678-1875735 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGCUGGUUCCAGUCUUCGCUGGCCGCCAUAAACCCGUAGAUCCGAACUUGUGGGGCUAUUAAAGCACAAGCUCGGAUCUGCAGGCAUCUGUCGGCUUGGCCAAGCUCUUCAGCCACUC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCUGGUUCCAGUCUUC- -| C UAAA C A GGGCU
GCU GGCCG CA CC GUAGAUCCGA CUUGUG A
CGG UCGGC GU GG CGUCUAGGCU GAACAC U
CUCACCGACUUCUCGAAC U^ U CUAC A C GAAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ebu-Mir-10-P2f_5p |
mirBase accession | None |
Sequence |
0- AACCCGUAGAUCCGAACUUGUG -22
Get sequence
|
Star sequence |
Ebu-Mir-10-P2f_3p* |
mirBase accession | None |
Sequence |
36- CAAGCUCGGAUCUGCAGGCAUC -58
Get sequence
|