MirGeneDB ID | Ebu-Mir-10-P3f |
Family name |
MIR-10 (all species) |
Seed |
CCCUGAG |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-10-P1e
Ebu-Mir-10-P1f
Ebu-Mir-10-P2e
Ebu-Mir-10-P2f
Ebu-Mir-10-P3e
|
Orthologues |
Aae-Mir-10-P3
Asu-Mir-10-P3
Bfl-Mir-10-P3
Bge-Mir-10-P3
Bla-Mir-10-P3
Bpl-Mir-10-P3
Cgi-Mir-10-P3
Cin-Mir-10-P3
Cte-Mir-10-P3
Dan-Mir-10-P3
Dma-Mir-10-P3
Dme-Mir-10-P3
Dmo-Mir-10-P3
Dpu-Mir-10-P3
Dsi-Mir-10-P3
Dya-Mir-10-P3
Esc-Mir-10-P3
Isc-Mir-10-P3
Lan-Mir-10-P3
Lgi-Mir-10-P3
Nve-Mir-10
Obi-Mir-10-P3
Ovu-Mir-10-P3
Pmi-Mir-10-P3
Sko-Mir-10-P3
Spu-Mir-10-P3
Tca-Mir-10-P3
Xbo-Mir-10-P3
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Eburgeri_3) |
FYBX02010565.1: 1843228-1843293 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUAUCACAACAGGCUAGUGCUCCAUGCGUUCCCUGAGACCCUAACUCGUGAGAGGUCAGGUUGCUUGUUGACCACGAGCUGGGGUCGCAGGAAGCGUGCGAGGCACUCUGAUGAAAGCCUCAGUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGUAUCACAACAGGCUA-- - -| GUUC A A AGAGGUCAGG
GUG CUC CAUGC CCUG GACCCUA CUCGUG U
CAC GAG GUGCG GGAC CUGGGGU GAGCAC U
CUGACUCCGAAAGUAGUCU G C^ AA-- G C CAGUUGUUCG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ebu-Mir-10-P3f_5p |
mirBase accession | None |
Sequence |
0- UCCCUGAGACCCUAACUCGUGA -22
Get sequence
|
Star sequence |
Ebu-Mir-10-P3f_3p* |
mirBase accession | None |
Sequence |
44- ACGAGCUGGGGUCGCAGGAAGC -66
Get sequence
|