MirGeneDB 3.0
MirGeneDB ID

Csc-Mir-10-P1q1

Family name MIR-10 (all species)
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-10-P1q2-v1  Csc-Mir-10-P1q3-v1  Csc-Mir-10-P1r  Csc-Mir-10-P2r1  Csc-Mir-10-P2r2  Csc-Mir-10-P3r1  Csc-Mir-10-P3r2  Csc-Mir-10-P4q  Csc-Mir-10-P4r 
Orthologues Aae-Mir-10-P1-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  War-Mir-10-P1  Xbo-Mir-10-P1 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Eumetazoa
Genome context
(GCF_000671375.1_CSC)		 NW_019384341.1: 354569-354629 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1q1-v1)		 Mir-10-P1q3-v1 NW_019384341.1: 336261-336321 [-] Ensembl
Mir-10-P1q3-v2 NW_019384341.1: 336262-336320 [-] Ensembl
Mir-10-P1q2-v1 NW_019384341.1: 345312-345372 [-] Ensembl
Mir-10-P1q2-v2 NW_019384341.1: 345313-345371 [-] Ensembl
Mir-10-P1q1-v1 NW_019384341.1: 354569-354629 [-] Ensembl
Mir-10-P1q1-v2 NW_019384341.1: 354570-354628 [-] Ensembl
Variant

Csc-Mir-10-P1q1-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
CAUAUAACUUCAAGGGUCGUGCUCUACAUCUACCCUGUAGAUCCGAAUUUGUCAGGGUAUCUGACAACAAAUUCGGUUCUAGAGAGGUUUGUGUGGUGCAUACGAUUCACCGAUGUUCUUC
Get precursor sequence
Structure
        10          20        30         40        50         
CAUAUAACUUCAAGGGUC--    U      CU   -| G    U          CAGGGU 
                    GUGC CUACAU  ACC CU UAGA CCGAAUUUGU      A
                    UACG GGUGUG  UGG GA AUCU GGCUUAAACA      U
CUUCUUGUAGCCACUUAGCA    U      UU   A^ G    U          ACAGUC 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma
Mature sequence

Csc-Mir-10-P1q1-v1_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGAUCCGAAUUUGU -22
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Star sequence

Csc-Mir-10-P1q1-v1_3p*
mirBase accessionNone
Sequence 
38- AAAUUCGGUUCUAGAGAGGUUUG -61
Get sequence
Variant

Csc-Mir-10-P1q1-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
AUAUAACUUCAAGGGUCGUGCUCUACAUCUACCCUGUAGAUCCGAAUUUGUCAGGGUAUCUGACAACAAAUUCGGUUCUAGAGAGGUUUGUGUGGUGCAUACGAUUCACCGAUGUUCUU
Get precursor sequence
Structure
        10          20        30         40        50        
AUAUAACUUCAAGGGUC--    U      CU   -| G    U          CAGGGU 
                   GUGC CUACAU  ACC CU UAGA CCGAAUUUGU      A
                   UACG GGUGUG  UGG GA AUCU GGCUUAAACA      U
UUCUUGUAGCCACUUAGCA    U      UU   A^ G    U          ACAGUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma
Mature sequence

Csc-Mir-10-P1q1-v2_5p
mirBase accessionNone
Sequence 
0- ACCCUGUAGAUCCGAAUUUGUC -22
Get sequence
Star sequence

Csc-Mir-10-P1q1-v2_3p*
mirBase accessionNone
Sequence 
36- CAAAUUCGGUUCUAGAGAGGUUU -59
Get sequence