MirGeneDB ID | Csc-Mir-10-P3r2 |
Family name |
MIR-10 (all species) |
Seed |
CCCUGAG |
Species |
Arizona bark scorpion (Centruroides sculpturatus) |
MiRBase ID |
|
Paralogues |
Csc-Mir-10-P1q1
Csc-Mir-10-P1q2
Csc-Mir-10-P1q3
Csc-Mir-10-P1r
Csc-Mir-10-P2r1
Csc-Mir-10-P2r2
Csc-Mir-10-P3r1
Csc-Mir-10-P4q
Csc-Mir-10-P4r
|
Orthologues |
Aae-Mir-10-P3
Asu-Mir-10-P3
Bfl-Mir-10-P3
Bge-Mir-10-P3
Bla-Mir-10-P3
Bpl-Mir-10-P3
Cgi-Mir-10-P3
Cin-Mir-10-P3
Cte-Mir-10-P3
Dan-Mir-10-P3
Dma-Mir-10-P3
Dme-Mir-10-P3
Dmo-Mir-10-P3
Dpu-Mir-10-P3
Dsi-Mir-10-P3
Dya-Mir-10-P3
Esc-Mir-10-P3
Isc-Mir-10-P3
Lan-Mir-10-P3
Lgi-Mir-10-P3
Nve-Mir-10
Obi-Mir-10-P3
Ovu-Mir-10-P3
Pmi-Mir-10-P3
Sko-Mir-10-P3
Spu-Mir-10-P3
Tca-Mir-10-P3
Xbo-Mir-10-P3
|
Node of Origin (locus) |
C. sculpturatus
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCF_000671375.1_CSC) |
NW_019384344.1: 391437-391492 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUAUUCGACAAGAAUUCCCUGUUCCCCACUCCCUGAGACCCUAACUUGUGAUGCAAUCCUGUCACAGGUUAGUCUCUCAGGUCCUGGGUAGCAGGCGACCUCAUAUUCAUCAGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUAUUCGACAAGAAUUC--| C CUC CC UGCA
CCUGUU CCCA CCUGAGA CUAACUUGUGA A
GGACGA GGGU GGACUCU GAUUGGACACU U
AAGACUACUUAUACUCCAGC^ U CCU CU GUCC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Csc-Mir-10-P3r2_5p |
mirBase accession | None |
Sequence |
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
|
Star sequence |
Csc-Mir-10-P3r2_3p* |
mirBase accession | None |
Sequence |
34- ACAGGUUAGUCUCUCAGGUCCU -56
Get sequence
|