MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-10-P1b

Family name MIR-10 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-10b
Paralogues Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P2b  Xtr-Mir-10-P2c  Xtr-Mir-10-P3b  Xtr-Mir-10-P3c  Xtr-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1b-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1b-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1b-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1b-v1  Cja-Mir-10-P1b-v1  Cli-Mir-10-P1b-v1  Cmi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v1  Cpo-Mir-10-P1b-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1b-v1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b2-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1b-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1b-v1  Gga-Mir-10-P1b-v1  Gja-Mir-10-P1b-v1  Gmo-Mir-10-P1b1-v1  Gmo-Mir-10-P1b2-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hmi-Mir-10-P1b  Hru-Mir-10-P1  Hsa-Mir-10-P1b-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1b  Lch-Mir-10-P1b  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1b-v1  Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b2  Mdo-Mir-10-P1b-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1b-v1  Mmr-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v1  Mom-Mir-10-P1  Mun-Mir-10-P1b-v1  Neu-Mir-10-P1b-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1b-v1  Ocu-Mir-10-P1b-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1b-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1b-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1b-v1  Rph-Mir-10-P1  Sha-Mir-10-P1b-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1b  Spu-Mir-10-P1  Sto-Mir-10-P1b-v1  Tca-Mir-10-P1-v1  Tgu-Mir-10-P1b-v1  Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b2  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b4-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(xenTro9_add)		 chr9: 59969714-59969773 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1b-v1)		 Mir-10-P1b-v1 chr9: 59969714-59969773 [+] UCSC Ensembl
Mir-10-P1b-v2 chr9: 59969715-59969772 [+] UCSC Ensembl
Variant

Xtr-Mir-10-P1b-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
AGCAUACAUUAUUAAAACGUUGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGGUUCGUACAGUCACAGAUUCGAUUCUAGGGGGAUAUAUGGUCGAUGCAAAUACUUCGAUUUCAGC
Get precursor sequence
Structure
        10          20        30        40        50          
AGCAUACAUUAUUAAAA--|    U        A    G     C          UGGUUC 
                   CGUUG CUAUAUGU CCCU UAGAA CGAAUUUGUG      \
                   GUAGC GGUAUAUA GGGG AUCUU GCUUAGACAC      G
CGACUUUAGCUUCAUAAAC^    U        -    G     A          UGACAU 
.       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-10-P1b-v1_5p
mirBase accessionMIMAT0003558
Sequence 
0- UACCCUGUAGAACCGAAUUUGUG -23
Get sequence
Proposed targets TargetScanVert: xtr-miR-10b
Star sequence

Xtr-Mir-10-P1b-v1_3p*
mirBase accessionNone
Sequence 
38- CAGAUUCGAUUCUAGGGGGAUA -60
Get sequence
Variant

Xtr-Mir-10-P1b-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
GCAUACAUUAUUAAAACGUUGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGGUUCGUACAGUCACAGAUUCGAUUCUAGGGGGAUAUAUGGUCGAUGCAAAUACUUCGAUUUCAG
Get precursor sequence
Structure
        10          20        30        40        50         
GCAUACAUUAUUAAAAC--|   U        A    G     C          UGGUUC 
                   GUUG CUAUAUGU CCCU UAGAA CGAAUUUGUG      \
                   UAGC GGUAUAUA GGGG AUCUU GCUUAGACAC      G
GACUUUAGCUUCAUAAACG^   U        -    G     A          UGACAU 
      110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-10-P1b-v2_5p
mirBase accessionMIMAT0003558
Sequence 
0- ACCCUGUAGAACCGAAUUUGUGU -23
Get sequence
Proposed targets TargetScanVert: xtr-miR-10b
Star sequence

Xtr-Mir-10-P1b-v2_3p*
mirBase accessionNone
Sequence 
36- ACAGAUUCGAUUCUAGGGGGAU -58
Get sequence