MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-10-P2b

Family name MIR-10 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-100
Paralogues Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P2c  Xtr-Mir-10-P3b  Xtr-Mir-10-P3c  Xtr-Mir-10-P3d 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2b  Adi-Mir-10  Aga-Mir-10-P2  Agr-Mir-10-P2  Ami-Mir-10-P2b  Asp-Mir-10  Bfl-Mir-10-P2-v1  Bge-Mir-10-P2  Bko-Mir-10-P2  Bla-Mir-10-P2-v1  Bpl-Mir-10-P2  Bta-Mir-10-P2b  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2b  Cin-Mir-10-P2  Cja-Mir-10-P2b  Cpi-Mir-10-P2b  Cpo-Mir-10-P2b  Cte-Mir-10-P2  Dan-Mir-10-P2  Dgr-Mir-10-P2  Dlo-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Eba-Mir-10-P2  Eca-Mir-10-P2b  Ete-Mir-10-P2b  Gja-Mir-10-P2b  Gpa-Mir-10-P2  Gsp-Mir-10-P2  Hru-Mir-10-P2  Hsa-Mir-10-P2b  Isc-Mir-10-P2  Laf-Mir-10-P2b  Lan-Mir-10-P2  Lch-Mir-10-P2b  Lgi-Mir-10-P2  Lhy-Mir-10-P2  Llo-Mir-10-P2  Mgi-Mir-10-P2  Mml-Mir-10-P2b  Mmr-Mir-10-P2b  Mmu-Mir-10-P2b  Mom-Mir-10-P2  Mun-Mir-10-P2b  Neu-Mir-10-P2b  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2b  Obi-Mir-10-P2  Ocu-Mir-10-P2b  Ofu-Mir-10-P2  Ovu-Mir-10-P2  Pab-Mir-10-P2b  Pau-Mir-10-P2  Pbv-Mir-10-P2b  Pca-Mir-10-P2  Pdu-Mir-10-P2  Pfl-Mir-10-P2  Ple-Mir-10-P2  Pmi-Mir-10-P2  Pve-Mir-10-P2  Rno-Mir-10-P2b  Rph-Mir-10-P2  Sha-Mir-10-P2b  Sko-Mir-10-P2  Snu-Mir-10-P2  Spt-Mir-10-P2b  Sto-Mir-10-P2b  Tca-Mir-10-P2  Tur-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(xenTro9_add)		 chr7: 112711722-112711779 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2b)		 Mir-10-P2b chr7: 112711722-112711779 [+] UCSC Ensembl
Let-7-P1b chr7: 112714578-112714644 [+] UCSC Ensembl
Mir-10-P3b chr7: 112726416-112726474 [+] UCSC Ensembl
Seed ACCCGUA
Precursor
(pre-Mir +30nt flank)		 
UGUAUUGUACAUGUAUUGCUGGUUGCCAUAAACCCGUAGAUCCGAACUUGUGCUGUGCCCCUCUCACAAGCUCGAGUGUGCGGGUCUGUGUCGGCUUGGCUACGGCGGCGUGAGUGAG
Get precursor sequence
Structure
        10         20         30        40        50        
UGUAUUGUACAUGUAUU-   -|    C    A       G UC   A      CUGUG 
                  GCU GGUUG CAUA ACCCGUA A  CGA CUUGUG     C
                  CGG UCGGC GUGU UGGGCGU U  GCU GAACAC     C
GAGUGAGUGCGGCGGCAU   U^    U    C       G GA   C      UCUCC 
      110       100        90        80        70        60
Deep sequencing
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CommentBased on the 3' DcRNA reads in human (P2b) and platypus (P2c) it appears that this is a Group 2 miRNA.
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-10-P2b_5p
mirBase accessionMIMAT0003682
Sequence 
0- AACCCGUAGAUCCGAACUUGUG -22
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Proposed targets TargetScanVert: xtr-miR-100
Star sequence

Xtr-Mir-10-P2b_3p*
mirBase accessionNone
Sequence 
36- CAAGCUCGAGUGUGCGGGUCUG -58
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