MirGeneDB ID | Mun-Mir-10-P2b |
Family name |
MIR-10 (all species) |
Seed |
ACCCGUA |
Species |
Microcaecilia (Microcaecilia unicolor) |
MiRBase ID |
|
Paralogues |
Mun-Mir-10-P1b-v1
Mun-Mir-10-P1b-v2
Mun-Mir-10-P1c-v1
Mun-Mir-10-P1c-v2
Mun-Mir-10-P1d-v1
Mun-Mir-10-P1d-v2
Mun-Mir-10-P2c
Mun-Mir-10-P2d
Mun-Mir-10-P3b
Mun-Mir-10-P3c
Mun-Mir-10-P3d
|
Orthologues |
Aae-Mir-10-P2
Aca-Mir-10-P2b
Ami-Mir-10-P2b
Bfl-Mir-10-P2-v1
Bfl-Mir-10-P2-v2
Bge-Mir-10-P2
Bla-Mir-10-P2-v1
Bla-Mir-10-P2-v2
Bpl-Mir-10-P2
Bta-Mir-10-P2b
Cbr-Mir-10-P2
Cel-Mir-10-P2
Cfa-Mir-10-P2b
Cgi-Mir-10-P2
Cin-Mir-10-P2
Cpi-Mir-10-P2b
Cpo-Mir-10-P2b
Cte-Mir-10-P2
Dan-Mir-10-P2
Dma-Mir-10-P2
Dme-Mir-10-P2
Dmo-Mir-10-P2
Dpu-Mir-10-P2
Dsi-Mir-10-P2
Dya-Mir-10-P2
Ete-Mir-10-P2b
Gja-Mir-10-P2b
Hsa-Mir-10-P2b
Isc-Mir-10-P2
Lan-Mir-10-P2
Lch-Mir-10-P2b
Lgi-Mir-10-P2
Mml-Mir-10-P2b
Mmu-Mir-10-P2b
Npo-Mir-10-P2
Nve-Mir-10
Oan-Mir-10-P2b
Obi-Mir-10-P2
Ocu-Mir-10-P2b
Ovu-Mir-10-P2
Pbv-Mir-10-P2b
Pfl-Mir-10-P2
Pmi-Mir-10-P2
Rno-Mir-10-P2b
Sha-Mir-10-P2b
Sko-Mir-10-P2
Spt-Mir-10-P2b
Sto-Mir-10-P2b
Tca-Mir-10-P2
Xbo-Mir-10-P2
Xbo-Mir-10-P2-as
Xla-Mir-10-P2b1
Xla-Mir-10-P2b2
Xtr-Mir-10-P2b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Mun_miRNA_loci) |
10-P2a_LR594639.1:77633610-77633750: 42-101 [-]
|
Precursor (pre-Mir +30nt flank) |
UUCUUGUUCUGGUUUUUGCCAGUUGCCAUAAACCCGUAGAUCCGAUCUUGCGGUAUAAUUGAGUCACACAAGCCCGAGUCUGUGGGUCUGUGUCGGCAUGGCAAUGACAUCCAGACAAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCUUGUUCUGGUUUUU- -| C A UC AU CGGUAUAA
GCCA GUUG CAUA ACCCGUAGA CG CUUG U
CGGU CGGC GUGU UGGGUGUCU GC GAAC U
GAAACAGACCUACAGUAA A^ U C GA CC ACACUGAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Although the 3' uridine is templated is it assumed that it is post-transcriptionally added as most taxa do not express this nucleotide and it creates a +3 offset. |
3' NTU |
Yes
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Mun-Mir-10-P2b_5p |
mirBase accession | None |
Sequence |
0- AACCCGUAGAUCCGAUCUUGCG -22
Get sequence
|
Star sequence |
Mun-Mir-10-P2b_3p* |
mirBase accession | None |
Sequence |
38- CAAGCCCGAGUCUGUGGGUCUG -60
Get sequence
|