MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-10-P2b

Family name MIR-10 (all species)
Seed ACCCGUA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-99b
Paralogues Ami-Mir-10-P1b-v1  Ami-Mir-10-P1b-v2  Ami-Mir-10-P1c-v1  Ami-Mir-10-P1c-v2  Ami-Mir-10-P1d-v1  Ami-Mir-10-P1d-v2  Ami-Mir-10-P2c  Ami-Mir-10-P2d  Ami-Mir-10-P3b  Ami-Mir-10-P3c  Ami-Mir-10-P3d 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2b  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2b  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2b  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cpi-Mir-10-P2b  Cpo-Mir-10-P2b  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Ete-Mir-10-P2b  Gja-Mir-10-P2b  Hsa-Mir-10-P2b  Isc-Mir-10-P2  Lan-Mir-10-P2  Lch-Mir-10-P2b  Lgi-Mir-10-P2  Mml-Mir-10-P2b  Mmu-Mir-10-P2b  Mun-Mir-10-P2b  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2b  Obi-Mir-10-P2  Ocu-Mir-10-P2b  Ovu-Mir-10-P2  Pbv-Mir-10-P2b  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Rno-Mir-10-P2b  Sha-Mir-10-P2b  Sko-Mir-10-P2  Spt-Mir-10-P2b  Sto-Mir-10-P2b  Tca-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2  Xtr-Mir-10-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017714097.1: 238463-238519 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-10-P2b)
Mir-10-P3b NW_017714097.1: 234135-234193 [-] UCSC
Let-7-P1b NW_017714097.1: 238124-238190 [-] UCSC
Mir-10-P2b NW_017714097.1: 238463-238519 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCACAACACCCGCGCCUGCCGGUCGCCAUAAACCCGUAGAUCCGAACUUGCGGUCGCUCCUCGUGCAAGCUCGACUCUGUGGGUCUGUGUCGGCCUCGGCCUUGACAUCGGGACGCU
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Structure
        10        20          30        40        50        
GCACAACACCCGCGCCUGCC--|    C    A         UC   A      GUCGC 
                      GGUCG CAUA ACCCGUAGA  CGA CUUGCG     \
                      CCGGC GUGU UGGGUGUCU  GCU GAACGU     U
UCGCAGGGCUACAGUUCCGGCU^    U    C         CA   C      GCUCC 
     110       100        90        80        70        60
Deep sequencing
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CommentBased on the 3' moR reads in human (P2b) and platypus (P2c) it appears that this is a Group 2 miRNA.
3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
 +
To
Mature sequence

Ami-Mir-10-P2b_5p

mirBase accessionMIMAT0038112
Sequence
0- AACCCGUAGAUCCGAACUUGCG -22
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Star sequence

Ami-Mir-10-P2b_3p*

mirBase accessionMIMAT0038113
Sequence
35- CAAGCUCGACUCUGUGGGUCUG -57
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