Mir-10-P1d-v1

MirGeneDB ID

Ami-Mir-10-P1d

Family name

MIR-10 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-10c

Paralogues

Ami-Mir-10-P1b-v1 Ami-Mir-10-P1c-v1 Ami-Mir-10-P2b Ami-Mir-10-P2c Ami-Mir-10-P2d Ami-Mir-10-P3b Ami-Mir-10-P3c Ami-Mir-10-P3d

Orthologues

Aae-Mir-10-P1-v1 Aca-Mir-10-P1d-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bge-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cli-Mir-10-P1d-v1 Cmi-Mir-10-P1d-v1 Cpi-Mir-10-P1d-v1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dre-Mir-10-P1d1-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Efe-Mir-10-P1 Egr-Mir-10-P1 Gga-Mir-10-P1d-v1 Gja-Mir-10-P1d-v1 Gmo-Mir-10-P1d1-v1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hru-Mir-10-P1 Isc-Mir-10-P1-v1 Lch-Mir-10-P1d Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1d-v1 Mal-Mir-10-P1d1-v1 Mgi-Mir-10-P1 Mom-Mir-10-P1 Mun-Mir-10-P1d-v1 Npo-Mir-10-P1 Nve-Mir-10 Ofu-Mir-10-P1 Pau-Mir-10-P1 Pbv-Mir-10-P1d-v1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rph-Mir-10-P1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tni-Mir-10-P1d1-v1 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d4-v1 Xtr-Mir-10-P1d-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017708254.1: 346317-346378 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-10-P1d-v1)

Mir-10-P1d-v1 NW_017708254.1: 346317-346378 [+] UCSC
Mir-10-P1d-v2 NW_017708254.1: 346318-346377 [+] UCSC

Variant

Ami-Mir-10-P1d-v1

Seed

ACCCUGU

Precursor
(pre-Mir +30nt flank)

CAAGUGCCAUAGUCCACAGUCGCCUAUAUGUACCCUGUAGAAUCGAAUUUGUGUGAACAUUUCAGAGUCACAAAUUCGUCUCUAGGGGAAUAUAUGGACGAUGCCAGAGCCUUGUAAAGUUC

Get precursor sequence

Structure

        10          20        30        40        50        60 
CAAGUGCCAUAGUCCACA--|   C        A    G    AU          UGAACAU 
                    GUCG CUAUAUGU CCCU UAGA  CGAAUUUGUG       \
                    UAGC GGUAUAUA GGGG AUCU  GCUUAAACAC       U
CUUGAAAUGUUCCGAGACCG^   A        A    -    CU          UGAGACU 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

To

Mature sequence

Ami-Mir-10-P1d-v1_5p

mirBase accession

MIMAT0038034

Sequence

0- UACCCUGUAGAAUCGAAUUUGUG -23

Get sequence

Star sequence

Ami-Mir-10-P1d-v1_3p*