MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-10-P1d-v1

Family name MIR-10 (all species)
Seed ACCCUGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-10c
Paralogues Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1b-v2  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1c-v2  Xtr-Mir-10-P1d-v2  Xtr-Mir-10-P2b  Xtr-Mir-10-P2c  Xtr-Mir-10-P3b  Xtr-Mir-10-P3c  Xtr-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1d-v1  Aca-Mir-10-P1d-v2  Ami-Mir-10-P1d-v1  Ami-Mir-10-P1d-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cgi-Mir-10-P1  Cli-Mir-10-P1d-v1  Cli-Mir-10-P1d-v2  Cmi-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v2  Cpi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P1d1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Gga-Mir-10-P1d-v1  Gga-Mir-10-P1d-v2  Gja-Mir-10-P1d-v1  Gja-Mir-10-P1d-v2  Gmo-Mir-10-P1d1-v1  Gmo-Mir-10-P1d1-v2  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Loc-Mir-10-P1d-v1  Loc-Mir-10-P1d-v2  Mal-Mir-10-P1d1-v1  Mal-Mir-10-P1d1-v2  Mun-Mir-10-P1d-v1  Mun-Mir-10-P1d-v2  Npo-Mir-10-P1  Nve-Mir-10  Pbv-Mir-10-P1d-v1  Pbv-Mir-10-P1d-v2  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Sko-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P1d1-v2  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d3-v2  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P1d4-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(xenTro9_add)		 chr2: 142821736-142821794 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1d-v1)		 Mir-10-P1d-v1 chr2: 142821736-142821794 [-] UCSC Ensembl
Mir-10-P1d-v2 chr2: 142821737-142821793 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCUUGCGAUAUCAAAGAGGCGCUUAUAUGCACCCUGUAGAAUCGAAUUUGUGUGAGUUCUGAACCACAGAUUCGUCUCUAGGGGGGUAUAUGGGUGAUGCUACAGACUUCUCUCUAGG
Get precursor sequence
Structure
        10        20          30        40        50         
GUCUUGCGAUAUCAAAGAGG--|          A    G    AU          UGAGU 
                      CGCUUAUAUGC CCCU UAGA  CGAAUUUGUG     U
                      GUGGGUAUAUG GGGG AUCU  GCUUAGACAC     C
GGAUCUCUCUUCAGACAUCGUA^          -    G    CU          CAAGU 
       110       100        90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-10-P1d-v1_5p
mirBase accessionMIMAT0003559
Sequence 
0- CACCCUGUAGAAUCGAAUUUGUG -23
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Proposed targets TargetScanVert: xtr-miR-10c
Star sequence

Xtr-Mir-10-P1d-v1_3p* (predicted)
mirBase accessionNone
Sequence 
37- CAGAUUCGUCUCUAGGGGGGUA -59
Get sequence