Mir-10-P3c

MirGeneDB ID

Xtr-Mir-10-P3c

Family name

MIR-10 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-125b-2

Paralogues

Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1c-v1 Xtr-Mir-10-P1d-v1 Xtr-Mir-10-P2b Xtr-Mir-10-P2c Xtr-Mir-10-P3b Xtr-Mir-10-P3d

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3c Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3c Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3c Cfa-Mir-10-P3c Cin-Mir-10-P3 Cja-Mir-10-P3c Cli-Mir-10-P3c Cpi-Mir-10-P3c Cpo-Mir-10-P3c Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3c Dpu-Mir-10-P3 Dre-Mir-10-P3c1 Dre-Mir-10-P3c2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3c Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3c Gga-Mir-10-P3c Gja-Mir-10-P3c Gmo-Mir-10-P3c2 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3c Isc-Mir-10-P3 Laf-Mir-10-P3c Lan-Mir-10-P3 Lch-Mir-10-P3c Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3c Mal-Mir-10-P3c2 Mdo-Mir-10-P3c Mgi-Mir-10-P3 Mml-Mir-10-P3c Mmr-Mir-10-P3c Mmu-Mir-10-P3c Mom-Mir-10-P3 Mun-Mir-10-P3c Nag-Mir-10-P3-v1 Neu-Mir-10-P3c Nve-Mir-10 Oan-Mir-10-P3c Obi-Mir-10-P3 Ocu-Mir-10-P3c Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3c Pau-Mir-10-P3 Pbv-Mir-10-P3c Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3c Rph-Mir-10-P3 Sha-Mir-10-P3c Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3c Spu-Mir-10-P3 Sto-Mir-10-P3c Tca-Mir-10-P3 Tgu-Mir-10-P3c War-Mir-10-P3 Xbo-Mir-10-P3 Xla-Mir-10-P3c3 Xla-Mir-10-P3c4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(xenTro9_add)

chr2: 23205577-23205639 [+] UCSC Ensembl

Seed

CCCUGAG

Precursor
(pre-Mir +30nt flank)

ACCCACAGACCGAAGUUGGACUUUUCCUAGUCCCUGAGACCCUAACUUGUGAGGAUUUUUUAGCAACAAUCACAAGUUAGGCUCUUGGGACCUAGGCGGAGGGGAAACAGCAGCUUGUGGACU

Get precursor sequence

Structure

        10        20          30        40        50        60 
ACCCACAGACCGAAGUUGGA--|  UU     UC  UG   C            GGAUUUUU 
                      CUU  CCUAG  CC  AGA CCUAACUUGUGA        \
                      GAG  GGAUC  GG  UCU GGAUUGAACACU        U
UCAGGUGUUCGACGACAAAGGG^  GC     CA  GU   C            AACAACGA 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-10-P3c_5p

mirBase accession

MIMAT0003586

Sequence

0- UCCCUGAGACCCUAACUUGUGA -22

Get sequence

Proposed targets

TargetScanVert: xtr-miR-125b

Star sequence

Xtr-Mir-10-P3c_3p*

mirBase accession

None

Sequence

41- ACAAGUUAGGCUCUUGGGACCU -63

Get sequence