MirGeneDB ID | Mmu-Mir-10-P3c |
Family name |
MIR-10 (all species) |
Species |
House mouse (Mus musculus) |
MiRBase ID |
mmu-mir-125b-2
|
Paralogues |
Mmu-Mir-10-P1b-v1
Mmu-Mir-10-P1c-v1
Mmu-Mir-10-P2b
Mmu-Mir-10-P2c
Mmu-Mir-10-P2d
Mmu-Mir-10-P3b
Mmu-Mir-10-P3d
|
Orthologues |
Aae-Mir-10-P3
Aca-Mir-10-P3c
Adi-Mir-10
Aga-Mir-10-P3
Agr-Mir-10-P3
Ami-Mir-10-P3c
Asp-Mir-10
Asu-Mir-10-P3
Bfl-Mir-10-P3
Bge-Mir-10-P3
Bko-Mir-10-P3
Bla-Mir-10-P3
Bpl-Mir-10-P3
Bta-Mir-10-P3c
Cfa-Mir-10-P3c
Cin-Mir-10-P3
Cja-Mir-10-P3c
Cli-Mir-10-P3c
Cpi-Mir-10-P3c
Cpo-Mir-10-P3c
Cte-Mir-10-P3
Dan-Mir-10-P3
Dlo-Mir-10-P3
Dma-Mir-10-P3
Dme-Mir-10-P3
Dmo-Mir-10-P3
Dno-Mir-10-P3c
Dpu-Mir-10-P3
Dre-Mir-10-P3c1
Dre-Mir-10-P3c2
Dsi-Mir-10-P3
Dya-Mir-10-P3
Eba-Mir-10-P3
Eca-Mir-10-P3c
Egr-Mir-10-P3
Esc-Mir-10-P3
Ete-Mir-10-P3c
Gga-Mir-10-P3c
Gja-Mir-10-P3c
Gmo-Mir-10-P3c2
Gpa-Mir-10-P3
Gsa-Mir-10-P3
Gsp-Mir-10-P3
Hru-Mir-10-P3
Hsa-Mir-10-P3c
Isc-Mir-10-P3
Laf-Mir-10-P3c
Lan-Mir-10-P3
Lch-Mir-10-P3c
Lgi-Mir-10-P3
Lhy-Mir-10-P3
Llo-Mir-10-P3
Loc-Mir-10-P3c
Mal-Mir-10-P3c2
Mdo-Mir-10-P3c
Mgi-Mir-10-P3
Mml-Mir-10-P3c
Mmr-Mir-10-P3c
Mom-Mir-10-P3
Mun-Mir-10-P3c
Nag-Mir-10-P3-v1
Neu-Mir-10-P3c
Nve-Mir-10
Oan-Mir-10-P3c
Obi-Mir-10-P3
Ocu-Mir-10-P3c
Ofu-Mir-10-P3
Ovu-Mir-10-P3
Pab-Mir-10-P3c
Pau-Mir-10-P3
Pbv-Mir-10-P3c
Pca-Mir-10-P3
Pcr-Mir-10-P3
Pdu-Mir-10-P3
Ple-Mir-10-P3
Pmi-Mir-10-P3
Pve-Mir-10-P3
Rno-Mir-10-P3c
Rph-Mir-10-P3
Sha-Mir-10-P3c
Sko-Mir-10-P3
Snu-Mir-10-P3
Spt-Mir-10-P3c
Spu-Mir-10-P3
Sto-Mir-10-P3c
Tca-Mir-10-P3
Tgu-Mir-10-P3c
War-Mir-10-P3
Xbo-Mir-10-P3
Xla-Mir-10-P3c3
Xla-Mir-10-P3c4
Xtr-Mir-10-P3c
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Eumetazoa
|
Genome context (mm10) |
chr16: 77646279-77646339 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-10-P3c) |
Mir-10-P2c
chr16: 77598940-77598998 [+]
UCSC
Ensembl
Let-7-P1c
chr16: 77599672-77599738 [+]
UCSC
Ensembl
Mir-10-P3c
chr16: 77646279-77646339 [+]
UCSC
Ensembl
|
Seed |
CCCUGAG |
Precursor (pre-Mir +30nt flank) |
UUCUCCUGCAUCACACGAGACUUUGCCUAGUCCCUGAGACCCUAACUUGUGAGGUAUUUUAGUAACAUCACAAGUCAGGUUCUUGGGACCUAGGCGGAGGGAUACCAGCAGCUUGGGACCU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCUCCUGCAUCACACGAGA--| UC UG C A GGUAUUU
CUUUGCCUAG CC AGA CCU ACUUGUGA \
GAGGCGGAUC GG UCU GGA UGAACACU U
UCCAGGGUUCGACGACCAUAGG^ CA GU U C ACAAUGA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Br |
Br |
Ce |
Ce |
Em |
Em |
He |
Ki |
Li |
Lu |
Ov |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Mmu-Mir-10-P3c_5p |
mirBase accession | MIMAT0000136 |
Sequence |
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
|
Proposed targets |
microrna.org: MIMAT0000136
TargetScanVert: mmu-miR-125b-5p
miRDB: MIMAT0000136
|
Star sequence |
Mmu-Mir-10-P3c_3p* |
mirBase accession | MIMAT0004529 |
Sequence |
39- ACAAGUCAGGUUCUUGGGACCU -61
Get sequence
|
Proposed targets |
microrna.org: MIMAT0004529
TargetScanVert: mmu-miR-125b-2-3p
miRDB: MIMAT0004529
|