Mir-10-P3c

MirGeneDB ID

Mmu-Mir-10-P3c

Family name

MIR-10 (all species)

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-125b-2

Paralogues

Mmu-Mir-10-P1b-v1 Mmu-Mir-10-P1c-v1 Mmu-Mir-10-P2b Mmu-Mir-10-P2c Mmu-Mir-10-P2d Mmu-Mir-10-P3b Mmu-Mir-10-P3d

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3c Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3c Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3c Cfa-Mir-10-P3c Cin-Mir-10-P3 Cja-Mir-10-P3c Cli-Mir-10-P3c Cpi-Mir-10-P3c Cpo-Mir-10-P3c Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3c Dpu-Mir-10-P3 Dre-Mir-10-P3c1 Dre-Mir-10-P3c2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3c Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3c Gga-Mir-10-P3c Gja-Mir-10-P3c Gmo-Mir-10-P3c2 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3c Isc-Mir-10-P3 Laf-Mir-10-P3c Lan-Mir-10-P3 Lch-Mir-10-P3c Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3c Mal-Mir-10-P3c2 Mdo-Mir-10-P3c Mgi-Mir-10-P3 Mml-Mir-10-P3c Mmr-Mir-10-P3c Mom-Mir-10-P3 Mun-Mir-10-P3c Nag-Mir-10-P3-v1 Neu-Mir-10-P3c Nve-Mir-10 Oan-Mir-10-P3c Obi-Mir-10-P3 Ocu-Mir-10-P3c Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3c Pau-Mir-10-P3 Pbv-Mir-10-P3c Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3c Rph-Mir-10-P3 Sha-Mir-10-P3c Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3c Spu-Mir-10-P3 Sto-Mir-10-P3c Tca-Mir-10-P3 Tgu-Mir-10-P3c War-Mir-10-P3 Xbo-Mir-10-P3 Xla-Mir-10-P3c3 Xla-Mir-10-P3c4 Xtr-Mir-10-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(mm10)

chr16: 77646279-77646339 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3c)

Mir-10-P2c chr16: 77598940-77598998 [+] UCSC Ensembl
Let-7-P1c chr16: 77599672-77599738 [+] UCSC Ensembl
Mir-10-P3c chr16: 77646279-77646339 [+] UCSC Ensembl

Seed

CCCUGAG

Precursor
(pre-Mir +30nt flank)

UUCUCCUGCAUCACACGAGACUUUGCCUAGUCCCUGAGACCCUAACUUGUGAGGUAUUUUAGUAACAUCACAAGUCAGGUUCUUGGGACCUAGGCGGAGGGAUACCAGCAGCUUGGGACCU

Get precursor sequence

Structure

        10        20          30        40        50          
UUCUCCUGCAUCACACGAGA--|         UC  UG   C   A        GGUAUUU 
                      CUUUGCCUAG  CC  AGA CCU ACUUGUGA       \
                      GAGGCGGAUC  GG  UCU GGA UGAACACU       U
UCCAGGGUUCGACGACCAUAGG^         CA  GU   U   C        ACAAUGA 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-10-P3c_5p

mirBase accession

MIMAT0000136

Sequence

0- UCCCUGAGACCCUAACUUGUGA -22

Get sequence

Proposed targets

microrna.org: MIMAT0000136
TargetScanVert: mmu-miR-125b-5p
miRDB: MIMAT0000136

Star sequence

Mmu-Mir-10-P3c_3p*

mirBase accession

MIMAT0004529

Sequence

39- ACAAGUCAGGUUCUUGGGACCU -61

Get sequence

Proposed targets

microrna.org: MIMAT0004529
TargetScanVert: mmu-miR-125b-2-3p
miRDB: MIMAT0004529