MirGeneDB

MirGeneDB ID

Aca-Mir-10-P3c

Family name MIR-10 (all species)
Seed CCCUGAG
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-125b-2
Paralogues Aca-Mir-10-P1a-v1  Aca-Mir-10-P1a-v2  Aca-Mir-10-P1b-v1  Aca-Mir-10-P1b-v2  Aca-Mir-10-P1c-v1  Aca-Mir-10-P1c-v2  Aca-Mir-10-P2a  Aca-Mir-10-P2b  Aca-Mir-10-P2c  Aca-Mir-10-P3a  Aca-Mir-10-P3b 
Orthologues Aae-Mir-10-P3  Ami-Mir-10-P3c  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bta-Mir-10-P3c  Cfa-Mir-10-P3c  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3c  Cpi-Mir-10-P3c  Cpo-Mir-10-P3c  Cte-Mir-10-P3  Dan-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3c  Dpu-Mir-10-P3  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Ete-Mir-10-P3c  Gga-Mir-10-P3c  Hsa-Mir-10-P3c  Isc-Mir-10-P3  Lan-Mir-10-P3  Lgi-Mir-10-P3  Mdo-Mir-10-P3c  Mml-Mir-10-P3c  Mmu-Mir-10-P3c  Oan-Mir-10-P3c  Ocu-Mir-10-P3c  Pfl-Mir-10-P3  Pmi-Mir-10-P3  Rno-Mir-10-P3c  Sha-Mir-10-P3c  Sko-Mir-10-P3  Spu-Mir-10-P3  Sto-Mir-10-P3c  Tca-Mir-10-P3  Tgu-Mir-10-P3c  Xtr-Mir-10-P3c 
Node of Origin (locus) Vertebrata
Node of Origin (family) Eumetazoa
Genome context
(anoCar2)
3: 153990143-153990203 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUACUGGAUCAUAUCAGACUUUUCCUAGUCCCUGAGACCCUAACUUGUGAGGUUUUUAGUAACAAUCACAAGUCAGGCUCUUGGGACCUAGGCGGAGGGGAACCAGCAACUUUGGACUU
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Structure
        10        20          30        40        50          
UUCUACUGGAUCAUAUCAGA--|  UU     UC  UG   C   A        GGUUUUU 
                      CUU  CCUAG  CC  AGA CCU ACUUGUGA       \
                      GAG  GGAUC  GG  UCU GGA UGAACACU       A
UUCAGGUUUCAACGACCAAGGG^  GC     CA  GU   C   C        AACAAUG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk To Wh
Mature sequence

Aca-Mir-10-P3c_5p

MirBase accessionMIMAT0021729
Sequence
0- UCCCUGAGACCCUAACUUGUGA -22
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Star sequence

Aca-Mir-10-P3c_3p*

MirBase accessionNone
Sequence
39- ACAAGUCAGGCUCUUGGGACCU -61
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