MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-10-P1c

Family name MIR-10 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-10a
Paralogues Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P2b  Xtr-Mir-10-P2c  Xtr-Mir-10-P3b  Xtr-Mir-10-P3c  Xtr-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1c-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1c-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1c-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1c-v1  Cja-Mir-10-P1c-v1  Cli-Mir-10-P1c-v1  Cmi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v1  Cpo-Mir-10-P1c-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1c-v1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c2-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1c-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1c-v1  Gga-Mir-10-P1c-v1  Gja-Mir-10-P1c-v1  Gmo-Mir-10-P1c1-v1  Gmo-Mir-10-P1c2-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Hsa-Mir-10-P1c-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1c-v1  Lch-Mir-10-P1c  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1c-v1  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2b-v1  Mdo-Mir-10-P1c-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1c-v1  Mmr-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v1  Mom-Mir-10-P1  Mun-Mir-10-P1c-v1  Neu-Mir-10-P1c-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1c-v1  Ocu-Mir-10-P1c-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1c-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1c-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1c-v1  Rph-Mir-10-P1  Sha-Mir-10-P1c-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1c  Spu-Mir-10-P1  Sto-Mir-10-P1c-v1  Tca-Mir-10-P1-v1  Tgu-Mir-10-P1c-v1  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c2-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c4-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(xenTro9_add)		 chr10: 5060953-5061014 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1c-v1)		 Mir-10-P1c-v1 chr10: 5060953-5061014 [-] UCSC Ensembl
Mir-10-P1c-v2 chr10: 5060953-5061013 [-] UCSC Ensembl
Variant

Xtr-Mir-10-P1c-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
GAUAUUGCAGAUUUGCCUGUCCUCUGUAUGUACCCUGUAGAUCCGAAUUUGUGUGAGCGCAAUCAUAUCACAAAUUCGUGUCUGGGGGGAUAUGCAGUUGACACAAACGCUACAGAAAGACG
Get precursor sequence
Structure
        10          20        30        40        50        60 
GAUAUUGCAGAUUUGCC--|   CU        A    G    UC          UGAGCGC 
                   UGUC  CUGUAUGU CCCU UAGA  CGAAUUUGUG       \
                   ACAG  GACGUAUA GGGG GUCU  GCUUAAACAC       A
GCAGAAAGACAUCGCAAAC^   UU        -    G    GU          UAUACUA 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-10-P1c-v1_5p
mirBase accessionMIMAT0003557
Sequence 
0- UACCCUGUAGAUCCGAAUUUGUG -23
Get sequence
Proposed targets TargetScanVert: xtr-miR-10a
Star sequence

Xtr-Mir-10-P1c-v1_3p*
mirBase accessionNone
Sequence 
40- CAAAUUCGUGUCUGGGGGGAUA -62
Get sequence
Variant

Xtr-Mir-10-P1c-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
AUAUUGCAGAUUUGCCUGUCCUCUGUAUGUACCCUGUAGAUCCGAAUUUGUGUGAGCGCAAUCAUAUCACAAAUUCGUGUCUGGGGGGAUAUGCAGUUGACACAAACGCUACAGAAAGACG
Get precursor sequence
Structure
        10           20        30        40        50          
AUAUUGCAGAUUUGCCU---|  CU        A    G    UC          UGAGCGC 
                    GUC  CUGUAUGU CCCU UAGA  CGAAUUUGUG       \
                    CAG  GACGUAUA GGGG GUCU  GCUUAAACAC       A
GCAGAAAGACAUCGCAAACA^  UU        -    G    GU          UAUACUA 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-10-P1c-v2_5p
mirBase accessionMIMAT0003557
Sequence 
0- ACCCUGUAGAUCCGAAUUUGUG -22
Get sequence
Proposed targets TargetScanVert: xtr-miR-10a
Star sequence

Xtr-Mir-10-P1c-v2_3p*
mirBase accessionNone
Sequence 
39- CAAAUUCGUGUCUGGGGGGAUA -61
Get sequence