Mir-10-P1c-v1

MirGeneDB ID

Loc-Mir-10-P1c

Family name

MIR-10 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-10-P1b-v1 Loc-Mir-10-P1d-v1 Loc-Mir-10-P2c Loc-Mir-10-P2d Loc-Mir-10-P3b Loc-Mir-10-P3c Loc-Mir-10-P3d

Orthologues

Aae-Mir-10-P1-v1 Aca-Mir-10-P1c-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Ami-Mir-10-P1c-v1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bge-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Bta-Mir-10-P1c-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1c-v1 Cja-Mir-10-P1c-v1 Cli-Mir-10-P1c-v1 Cmi-Mir-10-P1c-v1 Cpi-Mir-10-P1c-v1 Cpo-Mir-10-P1c-v1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1c-v1 Dpu-Mir-10-P1-v1 Dre-Mir-10-P1c1-v1 Dre-Mir-10-P1c2-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Eca-Mir-10-P1c-v1 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1c-v1 Gga-Mir-10-P1c-v1 Gja-Mir-10-P1c-v1 Gmo-Mir-10-P1c1-v1 Gmo-Mir-10-P1c2-v1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hru-Mir-10-P1 Hsa-Mir-10-P1c-v1 Isc-Mir-10-P1-v1 Laf-Mir-10-P1c-v1 Lch-Mir-10-P1c Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Mal-Mir-10-P1c1-v1 Mal-Mir-10-P1c2a-v1 Mal-Mir-10-P1c2b-v1 Mdo-Mir-10-P1c-v1 Mgi-Mir-10-P1 Mml-Mir-10-P1c-v1 Mmr-Mir-10-P1c-v1 Mmu-Mir-10-P1c-v1 Mom-Mir-10-P1 Mun-Mir-10-P1c-v1 Neu-Mir-10-P1c-v1 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1c-v1 Ocu-Mir-10-P1c-v1 Ofu-Mir-10-P1 Pab-Mir-10-P1c-v1 Pau-Mir-10-P1 Pbv-Mir-10-P1c-v1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1c-v1 Rph-Mir-10-P1 Sha-Mir-10-P1c-v1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spt-Mir-10-P1c Spu-Mir-10-P1 Sto-Mir-10-P1c-v1 Tca-Mir-10-P1-v1 Tgu-Mir-10-P1c-v1 Tni-Mir-10-P1c1-v1 Tni-Mir-10-P1c2-v1 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1c3-v1 Xla-Mir-10-P1c4-v1 Xtr-Mir-10-P1c-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(LepOcu1)

LG15: 9188973-9189035 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1c-v1)

Mir-10-P1c-v1 LG15: 9188973-9189035 [-] Ensembl
Mir-10-P1c-v2 LG15: 9188974-9189034 [-] Ensembl

Variant

Loc-Mir-10-P1c-v1

Seed

ACCCUGU

Precursor
(pre-Mir +30nt flank)

GGGCCGGUGCAAUUACCUGUCAUCUAUAUAUACCCUGUAGAUCCGAAUUUGUGUGAACAGACACUCGGUCACAAAUUCGUAUCUAGGGGAGUAUGUAGUUGAUAUAAACGCUGCGAUGCAGAG

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGGCCGGUGCAAUUACC--|    U        A    G     C         GUGAACAG 
                   UGUCA CUAUAUAU CCCU UAGAU CGAAUUUGU        A
                   AUAGU GAUGUAUG GGGG AUCUA GCUUAAACA        C
GAGACGUAGCGUCGCAAAU^    U        A    -     U         CUGGCUCA 
 120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-10-P1c-v1_5p

mirBase accession

None

Sequence

0- UACCCUGUAGAUCCGAAUUUGU -22

Get sequence

Star sequence

Loc-Mir-10-P1c-v1_3p*

mirBase accession

None

Sequence

42- AAAUUCGUAUCUAGGGGAGUA -63

Get sequence

Variant

Loc-Mir-10-P1c-v2

Seed

CCCUGUA

Precursor
(pre-Mir +30nt flank)

GGCCGGUGCAAUUACCUGUCAUCUAUAUAUACCCUGUAGAUCCGAAUUUGUGUGAACAGACACUCGGUCACAAAUUCGUAUCUAGGGGAGUAUGUAGUUGAUAUAAACGCUGCGAUGCAGA

Get precursor sequence

Structure

        10          20        30        40        50        60
GGCCGGUGCAAUUACCU--|   U        A    G     C          UGAACAG 
                   GUCA CUAUAUAU CCCU UAGAU CGAAUUUGUG       A
                   UAGU GAUGUAUG GGGG AUCUA GCUUAAACAC       C
AGACGUAGCGUCGCAAAUA^   U        A    -     U          UGGCUCA 
 .       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-10-P1c-v2_5p

mirBase accession

None

Sequence

0- ACCCUGUAGAUCCGAAUUUGUG -22

Get sequence

Star sequence

Loc-Mir-10-P1c-v2_3p*

mirBase accession

None

Sequence

40- CAAAUUCGUAUCUAGGGGAGU -61

Get sequence