MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-10-P1c2

Family name MIR-10 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-10a
Paralogues Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P2c1  Dre-Mir-10-P2c2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1c-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1c-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1c-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1c-v1  Cja-Mir-10-P1c-v1  Cli-Mir-10-P1c-v1  Cmi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v1  Cpo-Mir-10-P1c-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1c-v1  Dpu-Mir-10-P1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1c-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1c-v1  Gga-Mir-10-P1c-v1  Gja-Mir-10-P1c-v1  Gmo-Mir-10-P1c2-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Hsa-Mir-10-P1c-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1c-v1  Lch-Mir-10-P1c  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1c-v1  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2b-v1  Mdo-Mir-10-P1c-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1c-v1  Mmr-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v1  Mom-Mir-10-P1  Mun-Mir-10-P1c-v1  Neu-Mir-10-P1c-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1c-v1  Ocu-Mir-10-P1c-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1c-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1c-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1c-v1  Rph-Mir-10-P1  Sha-Mir-10-P1c-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1c  Spu-Mir-10-P1  Sto-Mir-10-P1c-v1  Tca-Mir-10-P1-v1  Tgu-Mir-10-P1c-v1  Tni-Mir-10-P1c2-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1c-v1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(danRer11)		 chr12: 27134886-27134944 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1c2-v1)		 Mir-10-P1c2-v1 chr12: 27134886-27134944 [+] UCSC Ensembl
Mir-10-P1c2-v2 chr12: 27134887-27134943 [+] UCSC Ensembl
Variant

Dre-Mir-10-P1c2-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
CAAAUACCAAUGAUGUCUGUCAUCUAUAUAUACCCUGUAGAUCCGAAUUUGUGUGAAUAUACAGUCGCAAAUUCGUGUCUUGGGGAAUAUGUAGUUGACAUAAACACAACGCAAUACAG
Get precursor sequence
Structure
        10          20        30        40        50         
CAAAUACCAAUGAUGUC--|    U        A     U   UC         GUGAAU 
                   UGUCA CUAUAUAU CCCUG AGA  CGAAUUUGU      A
                   ACAGU GAUGUAUA GGGGU UCU  GCUUAAACG      U
GACAUAACGCAACACAAAU^    U        A     -   GU         CUGACA 
       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-10-P1c2-v1_5p
mirBase accessionMIMAT0001267
Sequence 
0- UACCCUGUAGAUCCGAAUUUGU -22
Get sequence
Proposed targets TargetScanFish: dre-miR-10a
Star sequence

Dre-Mir-10-P1c2-v1_3p*
mirBase accessionMIMAT0003391
Sequence 
38- AAAUUCGUGUCUUGGGGAAUA -59
Get sequence
Variant

Dre-Mir-10-P1c2-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
AAAUACCAAUGAUGUCUGUCAUCUAUAUAUACCCUGUAGAUCCGAAUUUGUGUGAAUAUACAGUCGCAAAUUCGUGUCUUGGGGAAUAUGUAGUUGACAUAAACACAACGCAAUACA
Get precursor sequence
Structure
        10          20        30        40        50        
AAAUACCAAUGAUGUCU--|   U        A     U   UC          UGAAU 
                   GUCA CUAUAUAU CCCUG AGA  CGAAUUUGUG     A
                   CAGU GAUGUAUA GGGGU UCU  GCUUAAACGC     U
ACAUAACGCAACACAAAUA^   U        A     -   GU          UGACA 
     110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-10-P1c2-v2_5p
mirBase accessionMIMAT0001267
Sequence 
0- ACCCUGUAGAUCCGAAUUUGUG -22
Get sequence
Proposed targets TargetScanFish: dre-miR-10a
Star sequence

Dre-Mir-10-P1c2-v2_3p*
mirBase accessionMIMAT0003391
Sequence 
36- CAAAUUCGUGUCUUGGGGAAU -57
Get sequence