MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-10-P3b1

Family name MIR-10 (all species)
Seed CCCUGAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-125a-1
Paralogues Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b1-v2  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1b2-v2  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c1-v2  Dre-Mir-10-P1c2-v1  Dre-Mir-10-P1c2-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P1d1-v2  Dre-Mir-10-P2c1  Dre-Mir-10-P2c2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dre-Mir-10-P3b2  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Ami-Mir-10-P3b  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cfa-Mir-10-P3b  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cpi-Mir-10-P3b  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gmo-Mir-10-P3b1  Hsa-Mir-10-P3b  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lgi-Mir-10-P3  Loc-Mir-10-P3b  Mal-Mir-10-P3b1  Mml-Mir-10-P3b  Mmu-Mir-10-P3b  Mun-Mir-10-P3b  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ovu-Mir-10-P3  Pbv-Mir-10-P3b  Pmi-Mir-10-P3  Rno-Mir-10-P3b  Sha-Mir-10-P3b  Sko-Mir-10-P3  Spt-Mir-10-P3b  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xtr-Mir-10-P3b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(danRer11)
chr16: 24898184-24898242 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3b1)
Let-7-P1b1 chr16: 24881136-24881205 [+] UCSC Ensembl
Mir-10-P3b1 chr16: 24898184-24898242 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUGUUUUUUUACACAGUAUGUCUCUUUGUCCCUGAGACCCUUAACCUGUGAGGUCAAACUAGGUCACAGGUGAGGUCCUCAGGAACAGGGCUGCAUGCGUCGUCAUCCCCAAACGUC
Get precursor sequence
Structure
        10          20        30        40        50         
UCCUGUUUUUUUACACA--|     CU      C      AC     A       GGUCA 
                   GUAUGU  CUUUGU CCUGAG  CCUUA CCUGUGA     A
                   CGUACG  GGGACA GGACUC  GGAGU GGACACU     A
CUGCAAACCCCUACUGCUG^     UC      A      CU     -       GGAUC 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-10-P3b1_5p

mirBase accessionMIMAT0001820
Sequence
0- UCCCUGAGACCCUUAACCUGUGA -23
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Proposed targets TargetScanFish: dre-miR-125a
Star sequence

Dre-Mir-10-P3b1_3p*

mirBase accessionNone
Sequence
37- ACAGGUGAGGUCCUCAGGAACA -59
Get sequence