MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-10-P3b

Family name MIR-10 (all species)
Seed CCCUGAG
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-125a
Paralogues Cpi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v2  Cpi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v2  Cpi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v2  Cpi-Mir-10-P2b  Cpi-Mir-10-P2c  Cpi-Mir-10-P2d  Cpi-Mir-10-P3c  Cpi-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Ami-Mir-10-P3b  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cfa-Mir-10-P3b  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Hsa-Mir-10-P3b  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lgi-Mir-10-P3  Loc-Mir-10-P3b  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mml-Mir-10-P3b  Mmu-Mir-10-P3b  Mun-Mir-10-P3b  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ovu-Mir-10-P3  Pbv-Mir-10-P3b  Pmi-Mir-10-P3  Rno-Mir-10-P3b  Sha-Mir-10-P3b  Sko-Mir-10-P3  Spt-Mir-10-P3b  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  Tni-Mir-10-P3b2  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xtr-Mir-10-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(chrPic1)
JH585122: 302630-302690 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3b)
Mir-10-P2b JH585122: 291497-291556 [+] UCSC Ensembl
Let-7-P1b JH585122: 293024-293091 [+] UCSC Ensembl
Mir-10-P3b JH585122: 302630-302690 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCUGUCUCGCUCCCGGCAGCCGUCUCUGUCCCUGAGACCCUUAACCUGUGAGGGCAGCGCAGAAUUCACAGGUGAGGUUCUUGGGAACCGAGCGACUGGCCCCGACACAGCGCAGCCAG
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Structure
        10           20        30        40        50        60
GCUCUGUCUCGCUCCCGG---|  C  U   U  C  UG   C     A       GGGCAG 
                     CAG CG CUC GU CC  AGA CCUUA CCUGUGA      C
                     GUC GC GAG CA GG  UCU GGAGU GGACACU      G
GACCGACGCGACACAGCCCCG^  A  -   C  A  GU   U     -       UAAGAC 
 .       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-10-P3b_5p

mirBase accessionMIMAT0037728
Sequence
0- UCCCUGAGACCCUUAACCUGUGA -23
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Star sequence

Cpi-Mir-10-P3b_3p*

mirBase accessionMIMAT0037729
Sequence
39- ACAGGUGAGGUUCUUGGGAACC -61
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