Mir-10-P3b

MirGeneDB ID

Eca-Mir-10-P3b

Family name

MIR-10 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-125a

Paralogues

Eca-Mir-10-P1b-v1 Eca-Mir-10-P1c-v1 Eca-Mir-10-P2b Eca-Mir-10-P2c Eca-Mir-10-P2d Eca-Mir-10-P3c Eca-Mir-10-P3d

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3b Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3b Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3b Cfa-Mir-10-P3b Cin-Mir-10-P3 Cja-Mir-10-P3b Cpi-Mir-10-P3b Cpo-Mir-10-P3b Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3b Gja-Mir-10-P3b Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3b Isc-Mir-10-P3 Laf-Mir-10-P3b Lan-Mir-10-P3 Lch-Mir-10-P3b Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3b Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mgi-Mir-10-P3 Mml-Mir-10-P3b Mmr-Mir-10-P3b Mmu-Mir-10-P3b Mom-Mir-10-P3 Mun-Mir-10-P3b Nag-Mir-10-P3-v1 Nve-Mir-10 Oan-Mir-10-P3b Obi-Mir-10-P3 Ocu-Mir-10-P3b Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3b Pau-Mir-10-P3 Pbv-Mir-10-P3b Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3b Rph-Mir-10-P3 Sha-Mir-10-P3b Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3b Spu-Mir-10-P3 Sto-Mir-10-P3b Tca-Mir-10-P3 Tni-Mir-10-P3b2 War-Mir-10-P3 Xbo-Mir-10-P3 Xla-Mir-10-P3b Xtr-Mir-10-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(GCA_002863925.1_EquCab3.0)

CM009157.1: 21666722-21666781 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3b)

Mir-10-P2b CM009157.1: 21666040-21666099 [+] UCSC Ensembl
Let-7-P1b CM009157.1: 21666218-21666284 [+] UCSC Ensembl
Mir-10-P3b CM009157.1: 21666722-21666781 [+] UCSC Ensembl

Seed

CCCUGAG

Precursor
(pre-Mir +30nt flank)

CACCACACACCACAACUGCCGGCCUCUGGGUCCCUGAGACCCUUUAACCUGUGAGGACGUCCAGGGUCACAGGUGAGGUUCUUGGGAGCCUGGCGUCUGGCCCAACCACAAGCCUGGGGA

Get precursor sequence

Structure

        10          20        30        40        50        60
CACCACACACCACAACU--|    CCU UG  UC  UG   C    UA        GGACG 
                   GCCGG   C  GG  CC  AGA CCUU  ACCUGUGA     U
                   CGGUC   G  CC  GG  UCU GGAG  UGGACACU     C
AGGGGUCCGAACACCAACC^    UGC GU  GA  GU   U    --        GGGAC 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-10-P3b_5p

mirBase accession

MIMAT0013008

Sequence

0- UCCCUGAGACCCUUUAACCUGUGA -24

Get sequence

Star sequence

Eca-Mir-10-P3b_3p*

mirBase accession

MIMAT0013009

Sequence

38- ACAGGUGAGGUUCUUGGGAGCC -60

Get sequence