MirGeneDB ID | Eca-Mir-10-P2c |
Family name |
MIR-10 (all species) |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-99a-2
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Paralogues |
Eca-Mir-10-P1b-v1
Eca-Mir-10-P1c-v1
Eca-Mir-10-P2b
Eca-Mir-10-P2d
Eca-Mir-10-P3b
Eca-Mir-10-P3c
Eca-Mir-10-P3d
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Orthologues |
Aae-Mir-10-P2
Aca-Mir-10-P2c
Adi-Mir-10
Aga-Mir-10-P2
Agr-Mir-10-P2
Ami-Mir-10-P2c
Asp-Mir-10
Bfl-Mir-10-P2-v1
Bge-Mir-10-P2
Bko-Mir-10-P2
Bla-Mir-10-P2-v1
Bpl-Mir-10-P2
Bta-Mir-10-P2c
Cbr-Mir-10-P2
Cel-Mir-10-P2
Cfa-Mir-10-P2c
Cin-Mir-10-P2
Cja-Mir-10-P2c
Cli-Mir-10-P2c
Cmi-Mir-10-P2c
Cpi-Mir-10-P2c
Cpo-Mir-10-P2c
Cte-Mir-10-P2
Dan-Mir-10-P2
Dgr-Mir-10-P2
Dlo-Mir-10-P2
Dma-Mir-10-P2
Dme-Mir-10-P2
Dmo-Mir-10-P2
Dno-Mir-10-P2c
Dpu-Mir-10-P2
Dre-Mir-10-P2c1
Dre-Mir-10-P2c2
Dsi-Mir-10-P2
Dya-Mir-10-P2
Eba-Mir-10-P2
Ete-Mir-10-P2c
Gga-Mir-10-P2c
Gja-Mir-10-P2c
Gmo-Mir-10-P2c2
Gpa-Mir-10-P2
Gsp-Mir-10-P2
Hru-Mir-10-P2
Hsa-Mir-10-P2c
Isc-Mir-10-P2
Laf-Mir-10-P2c
Lan-Mir-10-P2
Lch-Mir-10-P2c
Lgi-Mir-10-P2
Lhy-Mir-10-P2
Llo-Mir-10-P2
Loc-Mir-10-P2c
Mal-Mir-10-P2c2
Mgi-Mir-10-P2
Mml-Mir-10-P2c
Mmr-Mir-10-P2c
Mmu-Mir-10-P2c
Mom-Mir-10-P2
Mun-Mir-10-P2c
Neu-Mir-10-P2c
Npo-Mir-10-P2
Nve-Mir-10
Oan-Mir-10-P2c
Obi-Mir-10-P2
Ocu-Mir-10-P2c
Ofu-Mir-10-P2
Ovu-Mir-10-P2
Pab-Mir-10-P2c
Pau-Mir-10-P2
Pbv-Mir-10-P2c
Pca-Mir-10-P2
Pdu-Mir-10-P2
Pfl-Mir-10-P2
Ple-Mir-10-P2
Pmi-Mir-10-P2
Pve-Mir-10-P2
Rno-Mir-10-P2c
Rph-Mir-10-P2
Sha-Mir-10-P2c
Sko-Mir-10-P2
Snu-Mir-10-P2
Spt-Mir-10-P2c
Sto-Mir-10-P2c
Tca-Mir-10-P2
Tgu-Mir-10-P2c
Tur-Mir-10-P2
Xbo-Mir-10-P2
Xbo-Mir-10-P2-as
Xla-Mir-10-P2c3
Xla-Mir-10-P2c4
Xtr-Mir-10-P2c
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCA_002863925.1_EquCab3.0) |
CM009173.1: 16008731-16008789 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-10-P2c) |
Mir-10-P2c
CM009173.1: 16008731-16008789 [+]
UCSC
Ensembl
Let-7-P1c
CM009173.1: 16009464-16009530 [+]
UCSC
Ensembl
Mir-10-P3c
CM009173.1: 16052916-16052976 [+]
UCSC
Ensembl
|
Seed |
ACCCGUA |
Precursor (pre-Mir +30nt flank) |
AGCUCAUGUGAGAUGUUGCCCAUUGGCAUAAACCCGUAGAUCCGAUCUUGUGGUGAAGUGGACCUCACAAGCUCGCUUCUAUGGGUCUGUGUCAGUGUGGUAAUCUGACAAAAUGCUAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCUCAUGUGAGAUGUU- -| A UC U GUGAAG
GCC CAUUGGCAUA ACCCGUAGA CGA CUUGUG \
UGG GUGACUGUGU UGGGUAUCU GCU GAACAC U
UAUCGUAAAACAGUCUAA U^ C UC C UCCAGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Based on the 3' DcRNA reads in human (P2b) and platypus (P2c) it appears that this is a Group 2 miRNA. |
3' NTU |
Yes
|
Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Mature sequence |
Eca-Mir-10-P2c_5p |
mirBase accession | MIMAT0013184 |
Sequence |
0- AACCCGUAGAUCCGAUCUUGUG -22
Get sequence
|
Star sequence |
Eca-Mir-10-P2c_3p* |
mirBase accession | None |
Sequence |
37- CAAGCUCGCUUCUAUGGGUCUG -59
Get sequence
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