Mir-10-P1c1-v1

MirGeneDB ID

Mal-Mir-10-P1c1

Family name

Species

MiRBase ID

Paralogues

Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b2 Mal-Mir-10-P1c2a-v1 Mal-Mir-10-P1c2b-v1 Mal-Mir-10-P1d1-v1 Mal-Mir-10-P2c2 Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mal-Mir-10-P3c2 Mal-Mir-10-P3d1 Mal-Mir-10-P3d2

Orthologues

Aae-Mir-10-P1-v1 Aca-Mir-10-P1c-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Ami-Mir-10-P1c-v1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bge-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Bta-Mir-10-P1c-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1c-v1 Cja-Mir-10-P1c-v1 Cli-Mir-10-P1c-v1 Cmi-Mir-10-P1c-v1 Cpi-Mir-10-P1c-v1 Cpo-Mir-10-P1c-v1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1c-v1 Dpu-Mir-10-P1-v1 Dre-Mir-10-P1c1-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Eca-Mir-10-P1c-v1 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1c-v1 Gga-Mir-10-P1c-v1 Gja-Mir-10-P1c-v1 Gmo-Mir-10-P1c1-v1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hru-Mir-10-P1 Hsa-Mir-10-P1c-v1 Isc-Mir-10-P1-v1 Laf-Mir-10-P1c-v1 Lch-Mir-10-P1c Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1c-v1 Mdo-Mir-10-P1c-v1 Mgi-Mir-10-P1 Mml-Mir-10-P1c-v1 Mmr-Mir-10-P1c-v1 Mmu-Mir-10-P1c-v1 Mom-Mir-10-P1 Mun-Mir-10-P1c-v1 Neu-Mir-10-P1c-v1 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1c-v1 Ocu-Mir-10-P1c-v1 Ofu-Mir-10-P1 Pab-Mir-10-P1c-v1 Pau-Mir-10-P1 Pbv-Mir-10-P1c-v1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1c-v1 Rph-Mir-10-P1 Sha-Mir-10-P1c-v1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spt-Mir-10-P1c Spu-Mir-10-P1 Sto-Mir-10-P1c-v1 Tca-Mir-10-P1-v1 Tgu-Mir-10-P1c-v1 Tni-Mir-10-P1c1-v1 War-Mir-10-P1 Xbo-Mir-10-P1 Xtr-Mir-10-P1c-v1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884780.1: 273802-273867 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1c1-v1)

Mir-10-P1c1-v1 KV884780.1: 273802-273867 [+] UCSC Ensembl
Mir-10-P1c1-v2 KV884780.1: 273803-273866 [+] UCSC Ensembl

Variant

Mal-Mir-10-P1c1-v1

Seed

ACCCUGU

Precursor
(pre-Mir +30nt flank)

UGCCUCCAGAGAGCCACUGUCUUCUAUAUCUACCCUGUAGAUCCGGAUUUGUGUAAAAAUCAUUAAAACAAUCACAAAUUCGCUUCUAGGGGAGUAUAUAGUGGAUUUAAACACGACGGCAGCGAU

Get precursor sequence

Structure

        10          20         30        40        50        60   
UGCCUCCAGAGAGCCACU--    U      -| A    G    UC         GUAAAAAUCA 
                    GUCU CUAUAU CU CCCU UAGA  CGGAUUUGU          \
                    UAGG GAUAUA GA GGGG AUCU  GCUUAAACA          U
UAGCGACGGCAGCACAAAUU    U      U^ -    -    UC         CUAACAAAAU 
    120       110       100         90         80        70

Deep sequencing

Go to detailed chart

Comment

The Drosha cut appears to be blunt if the 3p is complete according to the reads.

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-10-P1c1-v1_5p

mirBase accession

None

Sequence

0- UACCCUGUAGAUCCGGAUUUGU -22

Get sequence

Star sequence

Mal-Mir-10-P1c1-v1_3p*

mirBase accession

None

Sequence

44- CAAAUUCGCUUCUAGGGGAGUA -66

Get sequence

Variant

Mal-Mir-10-P1c1-v2

Seed

CCCUGUA

Precursor
(pre-Mir +30nt flank)

GCCUCCAGAGAGCCACUGUCUUCUAUAUCUACCCUGUAGAUCCGGAUUUGUGUAAAAAUCAUUAAAACAAUCACAAAUUCGCUUCUAGGGGAGUAUAUAGUGGAUUUAAACACGACGGCAGCGA

Get precursor sequence

Structure

        10          20         30        40        50        60  
GCCUCCAGAGAGCCACU--    U      -| A    G    UC          UAAAAAUCA 
                   GUCU CUAUAU CU CCCU UAGA  CGGAUUUGUG         \
                   UAGG GAUAUA GA GGGG AUCU  GCUUAAACAC         U
AGCGACGGCAGCACAAAUU    U      U^ -    -    UC          UAACAAAAU 
  120       110       100         90         80        70

Deep sequencing

Go to detailed chart

Comment

The Drosha cut appears to be blunt if the 3p is complete according to the reads.

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-10-P1c1-v2_5p

mirBase accession

None

Sequence

0- ACCCUGUAGAUCCGGAUUUGUG -22

Get sequence

Star sequence

Mal-Mir-10-P1c1-v2_3p*

mirBase accession

None

Sequence

42- ACAAAUUCGCUUCUAGGGGAGU -64

Get sequence