MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-10-P1c1

Family name MIR-10 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b2  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2b-v1  Mal-Mir-10-P1d1-v1  Mal-Mir-10-P2c2  Mal-Mir-10-P2d1  Mal-Mir-10-P2d2  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mal-Mir-10-P3c2  Mal-Mir-10-P3d1  Mal-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1c-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1c-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1c-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1c-v1  Cja-Mir-10-P1c-v1  Cli-Mir-10-P1c-v1  Cmi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v1  Cpo-Mir-10-P1c-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1c-v1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1c1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1c-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1c-v1  Gga-Mir-10-P1c-v1  Gja-Mir-10-P1c-v1  Gmo-Mir-10-P1c1-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Hsa-Mir-10-P1c-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1c-v1  Lch-Mir-10-P1c  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1c-v1  Mdo-Mir-10-P1c-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1c-v1  Mmr-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v1  Mom-Mir-10-P1  Mun-Mir-10-P1c-v1  Neu-Mir-10-P1c-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1c-v1  Ocu-Mir-10-P1c-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1c-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1c-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1c-v1  Rph-Mir-10-P1  Sha-Mir-10-P1c-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1c  Spu-Mir-10-P1  Sto-Mir-10-P1c-v1  Tca-Mir-10-P1-v1  Tgu-Mir-10-P1c-v1  Tni-Mir-10-P1c1-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1c-v1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884780.1: 273803-273866 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1c1-v2)		 Mir-10-P1c1-v1 KV884780.1: 273802-273867 [+] UCSC Ensembl
Mir-10-P1c1-v2 KV884780.1: 273803-273866 [+] UCSC Ensembl
Variant

Mal-Mir-10-P1c1-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
GCCUCCAGAGAGCCACUGUCUUCUAUAUCUACCCUGUAGAUCCGGAUUUGUGUAAAAAUCAUUAAAACAAUCACAAAUUCGCUUCUAGGGGAGUAUAUAGUGGAUUUAAACACGACGGCAGCGA
Get precursor sequence
Structure
        10          20         30        40        50        60  
GCCUCCAGAGAGCCACU--    U      -| A    G    UC          UAAAAAUCA 
                   GUCU CUAUAU CU CCCU UAGA  CGGAUUUGUG         \
                   UAGG GAUAUA GA GGGG AUCU  GCUUAAACAC         U
AGCGACGGCAGCACAAAUU    U      U^ -    -    UC          UAACAAAAU 
  120       110       100         90         80        70
Deep sequencing
Go to detailed chart
CommentThe Drosha cut appears to be blunt if the 3p is complete according to the reads.
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-10-P1c1-v2_5p
mirBase accessionNone
Sequence 
0- ACCCUGUAGAUCCGGAUUUGUG -22
Get sequence
Star sequence

Mal-Mir-10-P1c1-v2_3p*
mirBase accessionNone
Sequence 
42- ACAAAUUCGCUUCUAGGGGAGU -64
Get sequence
Variant

Mal-Mir-10-P1c1-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
UGCCUCCAGAGAGCCACUGUCUUCUAUAUCUACCCUGUAGAUCCGGAUUUGUGUAAAAAUCAUUAAAACAAUCACAAAUUCGCUUCUAGGGGAGUAUAUAGUGGAUUUAAACACGACGGCAGCGAU
Get precursor sequence
Structure
        10          20         30        40        50        60   
UGCCUCCAGAGAGCCACU--    U      -| A    G    UC         GUAAAAAUCA 
                    GUCU CUAUAU CU CCCU UAGA  CGGAUUUGU          \
                    UAGG GAUAUA GA GGGG AUCU  GCUUAAACA          U
UAGCGACGGCAGCACAAAUU    U      U^ -    -    UC         CUAACAAAAU 
    120       110       100         90         80        70
Deep sequencing
Go to detailed chart
CommentThe Drosha cut appears to be blunt if the 3p is complete according to the reads.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-10-P1c1-v1_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGAUCCGGAUUUGU -22
Get sequence
Star sequence

Mal-Mir-10-P1c1-v1_3p*
mirBase accessionNone
Sequence 
44- CAAAUUCGCUUCUAGGGGAGUA -66
Get sequence