Mir-10-P1b1-v1

MirGeneDB ID

Mal-Mir-10-P1b1

Family name

Species

MiRBase ID

Paralogues

Mal-Mir-10-P1b2 Mal-Mir-10-P1c1-v1 Mal-Mir-10-P1c2a-v1 Mal-Mir-10-P1c2b-v1 Mal-Mir-10-P1d1-v1 Mal-Mir-10-P2c2 Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mal-Mir-10-P3c2 Mal-Mir-10-P3d1 Mal-Mir-10-P3d2

Orthologues

Aae-Mir-10-P1-v1 Aca-Mir-10-P1b-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Ami-Mir-10-P1b-v1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bge-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Bta-Mir-10-P1b-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cja-Mir-10-P1b-v1 Cli-Mir-10-P1b-v1 Cmi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v1 Cpo-Mir-10-P1b-v1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1b-v1 Dpu-Mir-10-P1-v1 Dre-Mir-10-P1b1-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Eca-Mir-10-P1b-v1 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1b-v1 Gga-Mir-10-P1b-v1 Gja-Mir-10-P1b-v1 Gmo-Mir-10-P1b1-v1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hmi-Mir-10-P1b Hru-Mir-10-P1 Hsa-Mir-10-P1b-v1 Isc-Mir-10-P1-v1 Laf-Mir-10-P1b Lch-Mir-10-P1b Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1b-v1 Mdo-Mir-10-P1b-v1 Mgi-Mir-10-P1 Mml-Mir-10-P1b-v1 Mmr-Mir-10-P1b-v1 Mmu-Mir-10-P1b-v1 Mom-Mir-10-P1 Mun-Mir-10-P1b-v1 Neu-Mir-10-P1b-v1 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Ocu-Mir-10-P1b-v1 Ofu-Mir-10-P1 Pab-Mir-10-P1b-v1 Pau-Mir-10-P1 Pbv-Mir-10-P1b-v1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1b-v1 Rph-Mir-10-P1 Sha-Mir-10-P1b-v1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spt-Mir-10-P1b Spu-Mir-10-P1 Sto-Mir-10-P1b-v1 Tca-Mir-10-P1-v1 Tgu-Mir-10-P1b-v1 Tni-Mir-10-P1b1-v1 War-Mir-10-P1 Xbo-Mir-10-P1 Xtr-Mir-10-P1b-v1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884718.1: 892126-892187 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1b1-v1)

Mir-10-P1b1-v1 KV884718.1: 892126-892187 [+] UCSC Ensembl
Mir-10-P1b1-v2 KV884718.1: 892127-892186 [+] UCSC Ensembl

Variant

Mal-Mir-10-P1b1-v1

Seed

ACCCUGU

Precursor
(pre-Mir +30nt flank)

UGGCCAGUGUCGCUUCCCGUCGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGAUAAAACCACAGUCACAGAUUCGAUUCUAGGGGAGUAUAUGGUCGAUGAAAAAACUUCGAUUUACUG

Get precursor sequence

Structure

        10          20        30        40        50        60 
UGGCCAGUGUCGCUUCC--|    U        A    G     C         GUGAUAAA 
                   CGUCG CUAUAUAU CCCU UAGAA CGAAUUUGU        \
                   GUAGC GGUAUAUG GGGG AUCUU GCUUAGACA        A
GUCAUUUAGCUUCAAAAAA^    U        A    -     A         CUGACACC 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

Comment

The Drosha cut appears to be blunt if the 3p is complete according to the reads.

3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-10-P1b1-v1_5p

mirBase accession

None

Sequence

0- UACCCUGUAGAACCGAAUUUGU -22

Get sequence

Star sequence

Mal-Mir-10-P1b1-v1_3p*

mirBase accession

None

Sequence

41- AGAUUCGAUUCUAGGGGAGUA -62

Get sequence

Variant

Mal-Mir-10-P1b1-v2

Seed

CCCUGUA

Precursor
(pre-Mir +30nt flank)

GGCCAGUGUCGCUUCCCGUCGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGAUAAAACCACAGUCACAGAUUCGAUUCUAGGGGAGUAUAUGGUCGAUGAAAAAACUUCGAUUUACU

Get precursor sequence

Structure

        10          20        30        40        50          
GGCCAGUGUCGCUUCCC--|   U        A    G     C          UGAUAAA 
                   GUCG CUAUAUAU CCCU UAGAA CGAAUUUGUG       \
                   UAGC GGUAUAUG GGGG AUCUU GCUUAGACAC       A
UCAUUUAGCUUCAAAAAAG^   U        A    -     A          UGACACC 
.       110       100        90         80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on the 3p arm. The Drosha cut appears to be blunt if the 3p is complete according to the reads.

3' NTU

Unknown

Motifs

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-10-P1b1-v2_5p

mirBase accession

None

Sequence

0- ACCCUGUAGAACCGAAUUUGUG -22

Get sequence

Star sequence

Mal-Mir-10-P1b1-v2_3p*

mirBase accession

None

Sequence

39- CAGAUUCGAUUCUAGGGGAGU -60

Get sequence