MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-10-P1b1

Family name MIR-10 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b2  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2b-v1  Mal-Mir-10-P1d1-v1  Mal-Mir-10-P2c2  Mal-Mir-10-P2d1  Mal-Mir-10-P2d2  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mal-Mir-10-P3c2  Mal-Mir-10-P3d1  Mal-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1b-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1b-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1b-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1b-v1  Cja-Mir-10-P1b-v1  Cli-Mir-10-P1b-v1  Cmi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v1  Cpo-Mir-10-P1b-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1b-v1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1b1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1b-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1b-v1  Gga-Mir-10-P1b-v1  Gja-Mir-10-P1b-v1  Gmo-Mir-10-P1b1-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hmi-Mir-10-P1b  Hru-Mir-10-P1  Hsa-Mir-10-P1b-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1b  Lch-Mir-10-P1b  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1b-v1  Mdo-Mir-10-P1b-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1b-v1  Mmr-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v1  Mom-Mir-10-P1  Mun-Mir-10-P1b-v1  Neu-Mir-10-P1b-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1b-v1  Ocu-Mir-10-P1b-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1b-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1b-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1b-v1  Rph-Mir-10-P1  Sha-Mir-10-P1b-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1b  Spu-Mir-10-P1  Sto-Mir-10-P1b-v1  Tca-Mir-10-P1-v1  Tgu-Mir-10-P1b-v1  Tni-Mir-10-P1b1-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1b-v1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884718.1: 892127-892186 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1b1-v2)		 Mir-10-P1b1-v1 KV884718.1: 892126-892187 [+] UCSC Ensembl
Mir-10-P1b1-v2 KV884718.1: 892127-892186 [+] UCSC Ensembl
Variant

Mal-Mir-10-P1b1-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
GGCCAGUGUCGCUUCCCGUCGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGAUAAAACCACAGUCACAGAUUCGAUUCUAGGGGAGUAUAUGGUCGAUGAAAAAACUUCGAUUUACU
Get precursor sequence
Structure
        10          20        30        40        50          
GGCCAGUGUCGCUUCCC--|   U        A    G     C          UGAUAAA 
                   GUCG CUAUAUAU CCCU UAGAA CGAAUUUGUG       \
                   UAGC GGUAUAUG GGGG AUCUU GCUUAGACAC       A
UCAUUUAGCUUCAAAAAAG^   U        A    -     A          UGACACC 
.       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on the 3p arm. The Drosha cut appears to be blunt if the 3p is complete according to the reads.
3' NTU Unknown
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-10-P1b1-v2_5p
mirBase accessionNone
Sequence 
0- ACCCUGUAGAACCGAAUUUGUG -22
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Star sequence

Mal-Mir-10-P1b1-v2_3p*
mirBase accessionNone
Sequence 
39- CAGAUUCGAUUCUAGGGGAGU -60
Get sequence
Variant

Mal-Mir-10-P1b1-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
UGGCCAGUGUCGCUUCCCGUCGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGAUAAAACCACAGUCACAGAUUCGAUUCUAGGGGAGUAUAUGGUCGAUGAAAAAACUUCGAUUUACUG
Get precursor sequence
Structure
        10          20        30        40        50        60 
UGGCCAGUGUCGCUUCC--|    U        A    G     C         GUGAUAAA 
                   CGUCG CUAUAUAU CCCU UAGAA CGAAUUUGU        \
                   GUAGC GGUAUAUG GGGG AUCUU GCUUAGACA        A
GUCAUUUAGCUUCAAAAAA^    U        A    -     A         CUGACACC 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentThe Drosha cut appears to be blunt if the 3p is complete according to the reads.
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-10-P1b1-v1_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGAACCGAAUUUGU -22
Get sequence
Star sequence

Mal-Mir-10-P1b1-v1_3p*
mirBase accessionNone
Sequence 
41- AGAUUCGAUUCUAGGGGAGUA -62
Get sequence